Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC18.06■□□□□ 0.48
CCDC88AQ3V6T2 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC88AQ3V6T2 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC88AQ3V6T2 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC88AQ3V6T2 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC88AQ3V6T2 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
CCDC88AQ3V6T2 XBP1P1-201ENST00000436573 652 ntBASIC18.05■□□□□ 0.48
CCDC88AQ3V6T2 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC18.05■□□□□ 0.48
CCDC88AQ3V6T2 PRRC2B-207ENST00000458550 899 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC88AQ3V6T2 DMKN-256ENST00000492341 738 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
CCDC88AQ3V6T2 RN7SL596P-201ENST00000582123 288 ntBASIC18.05■□□□□ 0.48
CCDC88AQ3V6T2 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC18.05■□□□□ 0.48
CCDC88AQ3V6T2 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC88AQ3V6T2 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC88AQ3V6T2 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC88AQ3V6T2 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC88AQ3V6T2 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC88AQ3V6T2 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC18.05■□□□□ 0.48
CCDC88AQ3V6T2 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC88AQ3V6T2 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC88AQ3V6T2 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC88AQ3V6T2 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
CCDC88AQ3V6T2 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC88AQ3V6T2 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC18.05■□□□□ 0.48
CCDC88AQ3V6T2 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC88AQ3V6T2 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC88AQ3V6T2 FMC1-201ENST00000297534 1210 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC88AQ3V6T2 HCG27-204ENST00000424675 895 ntTSL 3 BASIC18.05■□□□□ 0.48
CCDC88AQ3V6T2 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC18.05■□□□□ 0.48
CCDC88AQ3V6T2 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC88AQ3V6T2 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC18.05■□□□□ 0.48
CCDC88AQ3V6T2 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC88AQ3V6T2 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC18.05■□□□□ 0.48
CCDC88AQ3V6T2 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC88AQ3V6T2 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC88AQ3V6T2 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
CCDC88AQ3V6T2 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC18.05■□□□□ 0.48
CCDC88AQ3V6T2 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC18.04■□□□□ 0.48
CCDC88AQ3V6T2 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC18.04■□□□□ 0.48
CCDC88AQ3V6T2 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC88AQ3V6T2 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC88AQ3V6T2 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC88AQ3V6T2 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC88AQ3V6T2 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC88AQ3V6T2 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.04■□□□□ 0.48
CCDC88AQ3V6T2 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC88AQ3V6T2 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC88AQ3V6T2 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC18.04■□□□□ 0.48
CCDC88AQ3V6T2 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC88AQ3V6T2 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC88AQ3V6T2 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
CCDC88AQ3V6T2 MMP7-201ENST00000260227 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC88AQ3V6T2 BGLAP-201ENST00000368272 732 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC88AQ3V6T2 S100A3-202ENST00000368713 856 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC88AQ3V6T2 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC88AQ3V6T2 BANF1P3-201ENST00000412556 261 ntBASIC18.04■□□□□ 0.48
CCDC88AQ3V6T2 DPY19L2P5-201ENST00000456300 331 ntBASIC18.04■□□□□ 0.48
CCDC88AQ3V6T2 CCNC-217ENST00000523985 958 ntTSL 2 BASIC18.04■□□□□ 0.48
CCDC88AQ3V6T2 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC18.04■□□□□ 0.48
CCDC88AQ3V6T2 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC18.04■□□□□ 0.48
CCDC88AQ3V6T2 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC18.04■□□□□ 0.48
CCDC88AQ3V6T2 AC009145.4-201ENST00000625119 1294 ntBASIC18.04■□□□□ 0.48
CCDC88AQ3V6T2 AC144522.1-201ENST00000625111 1658 ntBASIC18.04■□□□□ 0.48
CCDC88AQ3V6T2 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC18.04■□□□□ 0.48
CCDC88AQ3V6T2 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC88AQ3V6T2 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC88AQ3V6T2 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC88AQ3V6T2 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC88AQ3V6T2 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC88AQ3V6T2 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC18.03■□□□□ 0.48
CCDC88AQ3V6T2 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC88AQ3V6T2 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC18.03■□□□□ 0.48
CCDC88AQ3V6T2 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC88AQ3V6T2 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
CCDC88AQ3V6T2 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC88AQ3V6T2 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC88AQ3V6T2 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
CCDC88AQ3V6T2 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC18.03■□□□□ 0.48
CCDC88AQ3V6T2 PRKAR2A-AS1-203ENST00000431705 592 ntTSL 4 BASIC18.03■□□□□ 0.48
CCDC88AQ3V6T2 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC88AQ3V6T2 AL354861.1-201ENST00000445213 355 ntBASIC18.03■□□□□ 0.48
CCDC88AQ3V6T2 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC88AQ3V6T2 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC18.03■□□□□ 0.48
CCDC88AQ3V6T2 PIGT-208ENST00000545755 1158 ntTSL 5 BASIC18.03■□□□□ 0.48
CCDC88AQ3V6T2 TGFB3-204ENST00000556285 1280 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC88AQ3V6T2 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC88AQ3V6T2 TPM1-220ENST00000559556 977 ntAPPRIS ALT1 TSL 2 BASIC18.03■□□□□ 0.48
CCDC88AQ3V6T2 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC88AQ3V6T2 Z84468.1-201ENST00000626321 1408 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC88AQ3V6T2 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC88AQ3V6T2 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC88AQ3V6T2 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
CCDC88AQ3V6T2 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC88AQ3V6T2 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC88AQ3V6T2 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC88AQ3V6T2 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC88AQ3V6T2 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC18.03■□□□□ 0.48
CCDC88AQ3V6T2 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
CCDC88AQ3V6T2 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC88AQ3V6T2 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms