Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
RNF4P78317 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
RNF4P78317 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
RNF4P78317 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RNF4P78317 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RNF4P78317 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
RNF4P78317 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC14.01□□□□□ -0.17
RNF4P78317 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
RNF4P78317 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RNF4P78317 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RNF4P78317 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RNF4P78317 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
RNF4P78317 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC14.01□□□□□ -0.17
RNF4P78317 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
RNF4P78317 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC14□□□□□ -0.17
RNF4P78317 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC14□□□□□ -0.17
RNF4P78317 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
RNF4P78317 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
RNF4P78317 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
RNF4P78317 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
RNF4P78317 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
RNF4P78317 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC14□□□□□ -0.17
RNF4P78317 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
RNF4P78317 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
RNF4P78317 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
RNF4P78317 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC14□□□□□ -0.17
RNF4P78317 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
RNF4P78317 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
RNF4P78317 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC14□□□□□ -0.17
RNF4P78317 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC14□□□□□ -0.17
RNF4P78317 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
RNF4P78317 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
RNF4P78317 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC14□□□□□ -0.17
RNF4P78317 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC14□□□□□ -0.17
RNF4P78317 POM121L8P-201ENST00000417732 1281 ntBASIC14□□□□□ -0.17
RNF4P78317 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC14□□□□□ -0.17
RNF4P78317 AC026954.1-201ENST00000429771 1293 ntBASIC14□□□□□ -0.17
RNF4P78317 POM121L9P-203ENST00000441984 1285 ntBASIC14□□□□□ -0.17
RNF4P78317 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC14□□□□□ -0.17
RNF4P78317 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
RNF4P78317 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC14□□□□□ -0.17
RNF4P78317 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC14□□□□□ -0.17
RNF4P78317 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC14□□□□□ -0.17
RNF4P78317 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC14□□□□□ -0.17
RNF4P78317 NAA38-206ENST00000576384 424 ntTSL 2 BASIC14□□□□□ -0.17
RNF4P78317 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC14□□□□□ -0.17
RNF4P78317 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC14□□□□□ -0.17
RNF4P78317 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC14□□□□□ -0.17
RNF4P78317 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
RNF4P78317 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
RNF4P78317 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
RNF4P78317 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
RNF4P78317 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC14□□□□□ -0.17
RNF4P78317 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC14□□□□□ -0.17
RNF4P78317 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC14□□□□□ -0.17
RNF4P78317 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC14□□□□□ -0.17
RNF4P78317 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC14□□□□□ -0.17
RNF4P78317 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
RNF4P78317 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
RNF4P78317 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC14□□□□□ -0.17
RNF4P78317 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
RNF4P78317 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC14□□□□□ -0.17
RNF4P78317 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC14□□□□□ -0.17
RNF4P78317 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC14□□□□□ -0.17
RNF4P78317 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
RNF4P78317 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
RNF4P78317 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC14□□□□□ -0.17
RNF4P78317 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
RNF4P78317 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC14□□□□□ -0.17
RNF4P78317 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
RNF4P78317 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
RNF4P78317 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
RNF4P78317 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
RNF4P78317 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
RNF4P78317 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
RNF4P78317 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
RNF4P78317 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
RNF4P78317 AGAP7P-201ENST00000582299 2062 ntBASIC13.99□□□□□ -0.17
RNF4P78317 AGAP14-201ENST00000624701 2060 ntBASIC13.99□□□□□ -0.17
RNF4P78317 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
RNF4P78317 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
RNF4P78317 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC13.99□□□□□ -0.17
RNF4P78317 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
RNF4P78317 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
RNF4P78317 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
RNF4P78317 AC099336.1-201ENST00000417053 1171 ntBASIC13.99□□□□□ -0.17
RNF4P78317 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
RNF4P78317 HLA-V-201ENST00000429037 534 ntBASIC13.99□□□□□ -0.17
RNF4P78317 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC13.99□□□□□ -0.17
RNF4P78317 CSF2RBP1-201ENST00000447905 391 ntBASIC13.99□□□□□ -0.17
RNF4P78317 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
RNF4P78317 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC13.99□□□□□ -0.17
RNF4P78317 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC13.99□□□□□ -0.17
RNF4P78317 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
RNF4P78317 AC004466.1-201ENST00000599515 1080 ntBASIC13.99□□□□□ -0.17
RNF4P78317 MIR6752-201ENST00000618442 71 ntBASIC13.99□□□□□ -0.17
RNF4P78317 PID1-202ENST00000392054 2745 ntTSL 2 BASIC13.99□□□□□ -0.17
RNF4P78317 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
RNF4P78317 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
RNF4P78317 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms