Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC14.34□□□□□ -0.11
LIM2P55344 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
LIM2P55344 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC14.34□□□□□ -0.11
LIM2P55344 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIM2P55344 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIM2P55344 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC14.34□□□□□ -0.11
LIM2P55344 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIM2P55344 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
LIM2P55344 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIM2P55344 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LIM2P55344 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LIM2P55344 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC14.34□□□□□ -0.11
LIM2P55344 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
LIM2P55344 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC14.34□□□□□ -0.11
LIM2P55344 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
LIM2P55344 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC14.34□□□□□ -0.11
LIM2P55344 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
LIM2P55344 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
LIM2P55344 RPL28-203ENST00000428193 573 ntTSL 2 BASIC14.34□□□□□ -0.11
LIM2P55344 RPL28-204ENST00000431533 590 ntTSL 2 BASIC14.34□□□□□ -0.11
LIM2P55344 AL355864.2-201ENST00000447420 863 ntBASIC14.34□□□□□ -0.11
LIM2P55344 GAPDHP21-201ENST00000450301 1010 ntBASIC14.34□□□□□ -0.11
LIM2P55344 RBM7-207ENST00000544582 692 ntTSL 3 BASIC14.34□□□□□ -0.11
LIM2P55344 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC14.34□□□□□ -0.11
LIM2P55344 RPL28-207ENST00000558815 616 ntTSL 2 BASIC14.34□□□□□ -0.11
LIM2P55344 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC14.34□□□□□ -0.11
LIM2P55344 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
LIM2P55344 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
LIM2P55344 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC14.34□□□□□ -0.11
LIM2P55344 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC14.34□□□□□ -0.11
LIM2P55344 AL603764.1-201ENST00000636452 321 ntBASIC14.34□□□□□ -0.11
LIM2P55344 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC14.34□□□□□ -0.11
LIM2P55344 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
LIM2P55344 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
LIM2P55344 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIM2P55344 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
LIM2P55344 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
LIM2P55344 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIM2P55344 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIM2P55344 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC14.34□□□□□ -0.11
LIM2P55344 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LIM2P55344 AC055811.4-201ENST00000624039 1754 ntBASIC14.34□□□□□ -0.11
LIM2P55344 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIM2P55344 AC139749.1-202ENST00000617529 3139 ntBASIC14.34□□□□□ -0.11
LIM2P55344 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LIM2P55344 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIM2P55344 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIM2P55344 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
LIM2P55344 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIM2P55344 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIM2P55344 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIM2P55344 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIM2P55344 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC14.34□□□□□ -0.11
LIM2P55344 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LIM2P55344 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC14.34□□□□□ -0.11
LIM2P55344 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC14.34□□□□□ -0.11
LIM2P55344 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIM2P55344 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIM2P55344 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
LIM2P55344 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.11
LIM2P55344 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
LIM2P55344 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC14.33□□□□□ -0.11
LIM2P55344 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
LIM2P55344 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
LIM2P55344 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.11
LIM2P55344 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LIM2P55344 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
LIM2P55344 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LIM2P55344 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC14.33□□□□□ -0.12
LIM2P55344 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LIM2P55344 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC14.33□□□□□ -0.12
LIM2P55344 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC14.33□□□□□ -0.12
LIM2P55344 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
LIM2P55344 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LIM2P55344 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
LIM2P55344 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
LIM2P55344 AC005229.1-201ENST00000392885 409 ntBASIC14.33□□□□□ -0.12
LIM2P55344 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC14.33□□□□□ -0.12
LIM2P55344 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
LIM2P55344 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC14.33□□□□□ -0.12
LIM2P55344 AC106760.1-201ENST00000508690 800 ntBASIC14.33□□□□□ -0.12
LIM2P55344 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
LIM2P55344 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC14.33□□□□□ -0.12
LIM2P55344 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC14.33□□□□□ -0.12
LIM2P55344 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
LIM2P55344 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
LIM2P55344 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC14.33□□□□□ -0.12
LIM2P55344 AC233724.13-201ENST00000598383 410 ntBASIC14.33□□□□□ -0.12
LIM2P55344 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC14.33□□□□□ -0.12
LIM2P55344 AC145423.3-201ENST00000615987 467 ntBASIC14.33□□□□□ -0.12
LIM2P55344 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC14.33□□□□□ -0.12
LIM2P55344 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LIM2P55344 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
LIM2P55344 C1R-202ENST00000536053 2347 ntTSL 2 BASIC14.33□□□□□ -0.12
LIM2P55344 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LIM2P55344 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LIM2P55344 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LIM2P55344 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LIM2P55344 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
LIM2P55344 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms