Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HLA-DOAP06340 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
HLA-DOAP06340 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HLA-DOAP06340 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HLA-DOAP06340 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC17.68■□□□□ 0.42
HLA-DOAP06340 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HLA-DOAP06340 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC17.68■□□□□ 0.42
HLA-DOAP06340 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC17.68■□□□□ 0.42
HLA-DOAP06340 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HLA-DOAP06340 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HLA-DOAP06340 DPM3-202ENST00000368399 517 ntBASIC17.68■□□□□ 0.42
HLA-DOAP06340 MIR769-201ENST00000390225 118 ntBASIC17.68■□□□□ 0.42
HLA-DOAP06340 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC17.68■□□□□ 0.42
HLA-DOAP06340 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC17.68■□□□□ 0.42
HLA-DOAP06340 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HLA-DOAP06340 AC013355.1-201ENST00000562625 723 ntBASIC17.68■□□□□ 0.42
HLA-DOAP06340 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HLA-DOAP06340 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HLA-DOAP06340 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC17.68■□□□□ 0.42
HLA-DOAP06340 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HLA-DOAP06340 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HLA-DOAP06340 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC17.68■□□□□ 0.42
HLA-DOAP06340 AC004923.1-202ENST00000642106 209 ntBASIC17.68■□□□□ 0.42
HLA-DOAP06340 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC17.68■□□□□ 0.42
HLA-DOAP06340 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC17.68■□□□□ 0.42
HLA-DOAP06340 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC17.68■□□□□ 0.42
HLA-DOAP06340 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HLA-DOAP06340 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC17.68■□□□□ 0.42
HLA-DOAP06340 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC17.68■□□□□ 0.42
HLA-DOAP06340 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HLA-DOAP06340 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC17.68■□□□□ 0.42
HLA-DOAP06340 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HLA-DOAP06340 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HLA-DOAP06340 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HLA-DOAP06340 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
HLA-DOAP06340 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HLA-DOAP06340 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HLA-DOAP06340 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
HLA-DOAP06340 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HLA-DOAP06340 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
HLA-DOAP06340 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HLA-DOAP06340 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HLA-DOAP06340 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HLA-DOAP06340 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
HLA-DOAP06340 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
HLA-DOAP06340 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
HLA-DOAP06340 AL662890.1-201ENST00000396818 632 ntBASIC17.67■□□□□ 0.42
HLA-DOAP06340 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
HLA-DOAP06340 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC17.67■□□□□ 0.42
HLA-DOAP06340 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC17.67■□□□□ 0.42
HLA-DOAP06340 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HLA-DOAP06340 AC011742.3-201ENST00000439053 820 ntBASIC17.67■□□□□ 0.42
HLA-DOAP06340 OARD1-204ENST00000464633 717 ntTSL 2 BASIC17.67■□□□□ 0.42
HLA-DOAP06340 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
HLA-DOAP06340 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HLA-DOAP06340 MIR4783-201ENST00000580343 82 ntBASIC17.67■□□□□ 0.42
HLA-DOAP06340 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC17.67■□□□□ 0.42
HLA-DOAP06340 AC084346.2-201ENST00000607097 949 ntBASIC17.67■□□□□ 0.42
HLA-DOAP06340 AL021578.1-201ENST00000613646 709 ntBASIC17.67■□□□□ 0.42
HLA-DOAP06340 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC17.67■□□□□ 0.42
HLA-DOAP06340 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
HLA-DOAP06340 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC17.67■□□□□ 0.42
HLA-DOAP06340 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
HLA-DOAP06340 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HLA-DOAP06340 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
HLA-DOAP06340 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HLA-DOAP06340 AC006058.4-201ENST00000624016 1670 ntBASIC17.67■□□□□ 0.42
HLA-DOAP06340 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
HLA-DOAP06340 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HLA-DOAP06340 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC17.67■□□□□ 0.42
HLA-DOAP06340 AC004899.1-201ENST00000424687 1714 ntBASIC17.67■□□□□ 0.42
HLA-DOAP06340 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HLA-DOAP06340 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HLA-DOAP06340 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC17.66■□□□□ 0.42
HLA-DOAP06340 AC008741.2-201ENST00000612792 3115 ntBASIC17.66■□□□□ 0.42
HLA-DOAP06340 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC17.66■□□□□ 0.42
HLA-DOAP06340 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
HLA-DOAP06340 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HLA-DOAP06340 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
HLA-DOAP06340 CRCP-204ENST00000398684 492 ntTSL 2 BASIC17.66■□□□□ 0.42
HLA-DOAP06340 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HLA-DOAP06340 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC17.66■□□□□ 0.42
HLA-DOAP06340 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC17.66■□□□□ 0.42
HLA-DOAP06340 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC17.66■□□□□ 0.42
HLA-DOAP06340 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC17.66■□□□□ 0.42
HLA-DOAP06340 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC17.66■□□□□ 0.42
HLA-DOAP06340 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC17.66■□□□□ 0.42
HLA-DOAP06340 SYT17-208ENST00000568433 812 ntTSL 3 BASIC17.66■□□□□ 0.42
HLA-DOAP06340 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC17.66■□□□□ 0.42
HLA-DOAP06340 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC17.66■□□□□ 0.42
HLA-DOAP06340 AL136295.7-201ENST00000619226 1200 ntBASIC17.66■□□□□ 0.42
HLA-DOAP06340 AC091544.8-201ENST00000619490 361 ntBASIC17.66■□□□□ 0.42
HLA-DOAP06340 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
HLA-DOAP06340 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HLA-DOAP06340 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
HLA-DOAP06340 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HLA-DOAP06340 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC17.66■□□□□ 0.42
HLA-DOAP06340 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HLA-DOAP06340 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HLA-DOAP06340 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 68.7 ms