Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CACNA1FO60840 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CACNA1FO60840 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CACNA1FO60840 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CACNA1FO60840 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CACNA1FO60840 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC18.61■□□□□ 0.57
CACNA1FO60840 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CACNA1FO60840 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
CACNA1FO60840 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CACNA1FO60840 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CACNA1FO60840 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
CACNA1FO60840 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC18.61■□□□□ 0.57
CACNA1FO60840 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
CACNA1FO60840 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC18.61■□□□□ 0.57
CACNA1FO60840 AC092580.1-201ENST00000433998 658 ntBASIC18.61■□□□□ 0.57
CACNA1FO60840 AC012441.2-201ENST00000444843 739 ntBASIC18.61■□□□□ 0.57
CACNA1FO60840 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CACNA1FO60840 NOP2-211ENST00000540228 668 ntTSL 2 BASIC18.61■□□□□ 0.57
CACNA1FO60840 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC18.61■□□□□ 0.57
CACNA1FO60840 EID1-202ENST00000560490 584 ntTSL 3 BASIC18.61■□□□□ 0.57
CACNA1FO60840 MIR3188-201ENST00000583494 85 ntBASIC18.61■□□□□ 0.57
CACNA1FO60840 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC18.61■□□□□ 0.57
CACNA1FO60840 AC020914.3-201ENST00000594712 304 ntBASIC18.61■□□□□ 0.57
CACNA1FO60840 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC18.61■□□□□ 0.57
CACNA1FO60840 AL132994.2-201ENST00000603120 687 ntBASIC18.61■□□□□ 0.57
CACNA1FO60840 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
CACNA1FO60840 AC232323.1-201ENST00000540724 2099 ntBASIC18.6■□□□□ 0.57
CACNA1FO60840 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC18.6■□□□□ 0.57
CACNA1FO60840 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CACNA1FO60840 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CACNA1FO60840 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC18.6■□□□□ 0.57
CACNA1FO60840 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC18.6■□□□□ 0.57
CACNA1FO60840 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CACNA1FO60840 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CACNA1FO60840 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CACNA1FO60840 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
CACNA1FO60840 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
CACNA1FO60840 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
CACNA1FO60840 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CACNA1FO60840 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC18.6■□□□□ 0.57
CACNA1FO60840 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
CACNA1FO60840 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
CACNA1FO60840 HPD-204ENST00000543163 1709 ntTSL 5 BASIC18.6■□□□□ 0.57
CACNA1FO60840 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CACNA1FO60840 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
CACNA1FO60840 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CACNA1FO60840 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CACNA1FO60840 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CACNA1FO60840 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CACNA1FO60840 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC18.6■□□□□ 0.57
CACNA1FO60840 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC18.6■□□□□ 0.57
CACNA1FO60840 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC18.6■□□□□ 0.57
CACNA1FO60840 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC18.6■□□□□ 0.57
CACNA1FO60840 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CACNA1FO60840 AC009884.2-201ENST00000603110 324 ntBASIC18.6■□□□□ 0.57
CACNA1FO60840 MIR6799-201ENST00000620297 69 ntBASIC18.6■□□□□ 0.57
CACNA1FO60840 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
CACNA1FO60840 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CACNA1FO60840 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC18.6■□□□□ 0.57
CACNA1FO60840 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CACNA1FO60840 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CACNA1FO60840 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CACNA1FO60840 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC18.6■□□□□ 0.57
CACNA1FO60840 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CACNA1FO60840 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CACNA1FO60840 RN7SL832P-201ENST00000607781 1756 ntBASIC18.6■□□□□ 0.57
CACNA1FO60840 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CACNA1FO60840 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC18.59■□□□□ 0.57
CACNA1FO60840 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CACNA1FO60840 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
CACNA1FO60840 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
CACNA1FO60840 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CACNA1FO60840 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
CACNA1FO60840 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CACNA1FO60840 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC18.59■□□□□ 0.57
CACNA1FO60840 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
CACNA1FO60840 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CACNA1FO60840 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC18.59■□□□□ 0.57
CACNA1FO60840 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CACNA1FO60840 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC18.59■□□□□ 0.57
CACNA1FO60840 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CACNA1FO60840 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC18.59■□□□□ 0.57
CACNA1FO60840 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC18.59■□□□□ 0.57
CACNA1FO60840 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC18.59■□□□□ 0.57
CACNA1FO60840 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC18.59■□□□□ 0.57
CACNA1FO60840 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC18.59■□□□□ 0.57
CACNA1FO60840 DRG2-220ENST00000583355 891 ntTSL 3 BASIC18.59■□□□□ 0.57
CACNA1FO60840 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC18.59■□□□□ 0.57
CACNA1FO60840 AC090386.2-201ENST00000623010 1039 ntBASIC18.59■□□□□ 0.57
CACNA1FO60840 AC092299.1-201ENST00000632679 757 ntBASIC18.59■□□□□ 0.57
CACNA1FO60840 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC18.59■□□□□ 0.57
CACNA1FO60840 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CACNA1FO60840 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC18.59■□□□□ 0.57
CACNA1FO60840 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CACNA1FO60840 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CACNA1FO60840 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CACNA1FO60840 AMT-204ENST00000427987 1646 ntTSL 5 BASIC18.59■□□□□ 0.57
CACNA1FO60840 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC18.59■□□□□ 0.57
CACNA1FO60840 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC18.59■□□□□ 0.57
CACNA1FO60840 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 81.9 ms