Protein–RNA interactions for Protein: A6NKF7

TMEM88B, Transmembrane protein 88B, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM88BA6NKF7 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
TMEM88BA6NKF7 LINC01022-201ENST00000415652 394 ntTSL 3 BASIC17.14■□□□□ 0.33
TMEM88BA6NKF7 AP002856.2-201ENST00000416553 584 ntTSL 3 BASIC17.14■□□□□ 0.33
TMEM88BA6NKF7 AC006329.1-201ENST00000419422 705 ntTSL 2 BASIC17.14■□□□□ 0.33
TMEM88BA6NKF7 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC17.14■□□□□ 0.33
TMEM88BA6NKF7 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC17.14■□□□□ 0.33
TMEM88BA6NKF7 CDK2-203ENST00000440311 1031 ntTSL 2 BASIC17.14■□□□□ 0.33
TMEM88BA6NKF7 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC17.14■□□□□ 0.33
TMEM88BA6NKF7 AC002127.2-201ENST00000444032 792 ntTSL 3 BASIC17.14■□□□□ 0.33
TMEM88BA6NKF7 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC17.14■□□□□ 0.33
TMEM88BA6NKF7 LINC00824-204ENST00000520766 597 ntTSL 5 BASIC17.14■□□□□ 0.33
TMEM88BA6NKF7 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TMEM88BA6NKF7 AC093503.1-201ENST00000593888 495 ntTSL 3 BASIC17.14■□□□□ 0.33
TMEM88BA6NKF7 PHF23-213ENST00000613632 850 ntTSL 5 BASIC17.14■□□□□ 0.33
TMEM88BA6NKF7 IDH3A-224ENST00000629769 114 ntTSL 5 BASIC17.14■□□□□ 0.33
TMEM88BA6NKF7 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC17.14■□□□□ 0.33
TMEM88BA6NKF7 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TMEM88BA6NKF7 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TMEM88BA6NKF7 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TMEM88BA6NKF7 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TMEM88BA6NKF7 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
TMEM88BA6NKF7 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
TMEM88BA6NKF7 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TMEM88BA6NKF7 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
TMEM88BA6NKF7 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC17.14■□□□□ 0.33
TMEM88BA6NKF7 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC17.14■□□□□ 0.33
TMEM88BA6NKF7 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TMEM88BA6NKF7 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
TMEM88BA6NKF7 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TMEM88BA6NKF7 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC17.13■□□□□ 0.33
TMEM88BA6NKF7 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
TMEM88BA6NKF7 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TMEM88BA6NKF7 AC069224.1-201ENST00000566372 1715 ntBASIC17.13■□□□□ 0.33
TMEM88BA6NKF7 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TMEM88BA6NKF7 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TMEM88BA6NKF7 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
TMEM88BA6NKF7 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TMEM88BA6NKF7 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC17.13■□□□□ 0.33
TMEM88BA6NKF7 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC17.13■□□□□ 0.33
TMEM88BA6NKF7 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TMEM88BA6NKF7 KCNK18-201ENST00000334549 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TMEM88BA6NKF7 ATP5H-202ENST00000344546 553 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TMEM88BA6NKF7 APOA1-203ENST00000375320 940 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
TMEM88BA6NKF7 AQP7-202ENST00000377425 1068 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TMEM88BA6NKF7 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TMEM88BA6NKF7 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TMEM88BA6NKF7 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TMEM88BA6NKF7 AC090152.1-203ENST00000517898 1106 ntTSL 2 BASIC17.13■□□□□ 0.33
TMEM88BA6NKF7 C11orf1-202ENST00000528125 534 ntTSL 2 BASIC17.13■□□□□ 0.33
TMEM88BA6NKF7 YPEL4-209ENST00000534711 889 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
TMEM88BA6NKF7 ANAPC15-204ENST00000535234 848 ntAPPRIS P3 TSL 2 BASIC17.13■□□□□ 0.33
TMEM88BA6NKF7 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
TMEM88BA6NKF7 VPS18-202ENST00000558474 873 ntTSL 3 BASIC17.13■□□□□ 0.33
TMEM88BA6NKF7 ZNF175-204ENST00000596504 580 ntTSL 2 BASIC17.13■□□□□ 0.33
TMEM88BA6NKF7 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
TMEM88BA6NKF7 HELLS-212ENST00000630929 400 ntTSL 5 BASIC17.13■□□□□ 0.33
TMEM88BA6NKF7 AP000769.1-203ENST00000637245 208 ntBASIC17.13■□□□□ 0.33
TMEM88BA6NKF7 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC17.13■□□□□ 0.33
TMEM88BA6NKF7 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TMEM88BA6NKF7 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC17.13■□□□□ 0.33
TMEM88BA6NKF7 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TMEM88BA6NKF7 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC17.13■□□□□ 0.33
TMEM88BA6NKF7 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC17.13■□□□□ 0.33
TMEM88BA6NKF7 RPF1-201ENST00000370654 1385 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TMEM88BA6NKF7 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
TMEM88BA6NKF7 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TMEM88BA6NKF7 OR6D1P-203ENST00000641209 4860 ntBASIC17.13■□□□□ 0.33
TMEM88BA6NKF7 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TMEM88BA6NKF7 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
TMEM88BA6NKF7 BCCIP-203ENST00000368759 1433 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TMEM88BA6NKF7 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
TMEM88BA6NKF7 FAM168A-202ENST00000356467 1767 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TMEM88BA6NKF7 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TMEM88BA6NKF7 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TMEM88BA6NKF7 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
TMEM88BA6NKF7 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TMEM88BA6NKF7 SLC9A7P1-202ENST00000556476 2239 ntBASIC17.12■□□□□ 0.33
TMEM88BA6NKF7 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC17.12■□□□□ 0.33
TMEM88BA6NKF7 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.12■□□□□ 0.33
TMEM88BA6NKF7 TEX33-201ENST00000381821 978 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
TMEM88BA6NKF7 LINC00339-202ENST00000416769 1077 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TMEM88BA6NKF7 HIST1H2APS2-201ENST00000454426 370 ntBASIC17.12■□□□□ 0.33
TMEM88BA6NKF7 RN7SL846P-201ENST00000467429 292 ntBASIC17.12■□□□□ 0.33
TMEM88BA6NKF7 RN7SL288P-201ENST00000490496 291 ntBASIC17.12■□□□□ 0.33
TMEM88BA6NKF7 TRPC7-AS1-201ENST00000514459 460 ntTSL 3 BASIC17.12■□□□□ 0.33
TMEM88BA6NKF7 HOXC-AS3-203ENST00000514702 368 ntTSL 3 BASIC17.12■□□□□ 0.33
TMEM88BA6NKF7 URB1-AS1-201ENST00000534991 831 ntBASIC17.12■□□□□ 0.33
TMEM88BA6NKF7 KNOP1P1-201ENST00000542108 989 ntBASIC17.12■□□□□ 0.33
TMEM88BA6NKF7 GSTZ1-210ENST00000554279 795 ntTSL 2 BASIC17.12■□□□□ 0.33
TMEM88BA6NKF7 FBXO36P1-201ENST00000579006 471 ntBASIC17.12■□□□□ 0.33
TMEM88BA6NKF7 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC17.12■□□□□ 0.33
TMEM88BA6NKF7 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC17.12■□□□□ 0.33
TMEM88BA6NKF7 RNF103-CHMP3-202ENST00000604011 1135 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
TMEM88BA6NKF7 Metazoa_SRP.75-201ENST00000614439 293 ntBASIC17.12■□□□□ 0.33
TMEM88BA6NKF7 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TMEM88BA6NKF7 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
TMEM88BA6NKF7 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TMEM88BA6NKF7 UQCC2-204ENST00000607484 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TMEM88BA6NKF7 AC007491.1-201ENST00000637560 1306 ntTSL 5 BASIC17.12■□□□□ 0.33
TMEM88BA6NKF7 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms