Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC22.21■■□□□ 1.15
PCDHGA1Q9Y5H4 AC008764.7-201ENST00000593779 1081 ntBASIC22.21■■□□□ 1.15
PCDHGA1Q9Y5H4 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
PCDHGA1Q9Y5H4 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC22.21■■□□□ 1.15
PCDHGA1Q9Y5H4 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC22.21■■□□□ 1.15
PCDHGA1Q9Y5H4 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
PCDHGA1Q9Y5H4 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC22.2■■□□□ 1.14
PCDHGA1Q9Y5H4 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC22.2■■□□□ 1.14
PCDHGA1Q9Y5H4 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
PCDHGA1Q9Y5H4 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
PCDHGA1Q9Y5H4 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC22.2■■□□□ 1.14
PCDHGA1Q9Y5H4 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC22.2■■□□□ 1.14
PCDHGA1Q9Y5H4 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC22.19■■□□□ 1.14
PCDHGA1Q9Y5H4 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
PCDHGA1Q9Y5H4 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
PCDHGA1Q9Y5H4 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC22.19■■□□□ 1.14
PCDHGA1Q9Y5H4 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
PCDHGA1Q9Y5H4 AC099791.1-201ENST00000416440 715 ntBASIC22.19■■□□□ 1.14
PCDHGA1Q9Y5H4 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC22.19■■□□□ 1.14
PCDHGA1Q9Y5H4 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
PCDHGA1Q9Y5H4 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
PCDHGA1Q9Y5H4 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
PCDHGA1Q9Y5H4 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
PCDHGA1Q9Y5H4 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC22.19■■□□□ 1.14
PCDHGA1Q9Y5H4 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC22.18■■□□□ 1.14
PCDHGA1Q9Y5H4 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
PCDHGA1Q9Y5H4 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC22.18■■□□□ 1.14
PCDHGA1Q9Y5H4 RHOF-204ENST00000537265 699 ntTSL 2 BASIC22.18■■□□□ 1.14
PCDHGA1Q9Y5H4 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
PCDHGA1Q9Y5H4 AC136469.2-201ENST00000623944 1028 ntBASIC22.18■■□□□ 1.14
PCDHGA1Q9Y5H4 AC241377.3-202ENST00000626088 1088 ntBASIC22.18■■□□□ 1.14
PCDHGA1Q9Y5H4 AC241585.3-202ENST00000628937 1088 ntBASIC22.18■■□□□ 1.14
PCDHGA1Q9Y5H4 AC245100.8-202ENST00000629247 1058 ntBASIC22.18■■□□□ 1.14
PCDHGA1Q9Y5H4 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC22.18■■□□□ 1.14
PCDHGA1Q9Y5H4 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC22.18■■□□□ 1.14
PCDHGA1Q9Y5H4 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
PCDHGA1Q9Y5H4 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
PCDHGA1Q9Y5H4 JTB-203ENST00000368589 1216 ntTSL 2 BASIC22.17■■□□□ 1.14
PCDHGA1Q9Y5H4 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
PCDHGA1Q9Y5H4 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PCDHGA1Q9Y5H4 HES6-206ENST00000409574 738 ntTSL 2 BASIC22.16■■□□□ 1.14
PCDHGA1Q9Y5H4 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC22.16■■□□□ 1.14
PCDHGA1Q9Y5H4 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
PCDHGA1Q9Y5H4 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC22.16■■□□□ 1.14
PCDHGA1Q9Y5H4 MPST-208ENST00000628507 698 ntTSL 5 BASIC22.16■■□□□ 1.14
PCDHGA1Q9Y5H4 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
PCDHGA1Q9Y5H4 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
PCDHGA1Q9Y5H4 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC22.15■■□□□ 1.14
PCDHGA1Q9Y5H4 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC22.15■■□□□ 1.14
PCDHGA1Q9Y5H4 AC009102.2-201ENST00000606772 1639 ntBASIC22.15■■□□□ 1.14
PCDHGA1Q9Y5H4 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
PCDHGA1Q9Y5H4 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC22.15■■□□□ 1.14
PCDHGA1Q9Y5H4 AC131274.2-201ENST00000580697 1507 ntBASIC22.15■■□□□ 1.14
PCDHGA1Q9Y5H4 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
PCDHGA1Q9Y5H4 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC22.14■■□□□ 1.14
PCDHGA1Q9Y5H4 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.14
PCDHGA1Q9Y5H4 AK1-201ENST00000223836 736 ntTSL 3 BASIC22.14■■□□□ 1.13
PCDHGA1Q9Y5H4 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC22.14■■□□□ 1.13
PCDHGA1Q9Y5H4 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
PCDHGA1Q9Y5H4 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
PCDHGA1Q9Y5H4 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
PCDHGA1Q9Y5H4 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC22.13■■□□□ 1.13
PCDHGA1Q9Y5H4 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC22.13■■□□□ 1.13
PCDHGA1Q9Y5H4 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC22.13■■□□□ 1.13
PCDHGA1Q9Y5H4 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC22.13■■□□□ 1.13
PCDHGA1Q9Y5H4 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC22.13■■□□□ 1.13
PCDHGA1Q9Y5H4 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC22.13■■□□□ 1.13
PCDHGA1Q9Y5H4 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC22.13■■□□□ 1.13
PCDHGA1Q9Y5H4 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
PCDHGA1Q9Y5H4 AC233992.3-201ENST00000607491 485 ntBASIC22.13■■□□□ 1.13
PCDHGA1Q9Y5H4 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
PCDHGA1Q9Y5H4 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
PCDHGA1Q9Y5H4 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
PCDHGA1Q9Y5H4 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
PCDHGA1Q9Y5H4 BX842568.3-201ENST00000418104 571 ntBASIC22.12■■□□□ 1.13
PCDHGA1Q9Y5H4 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC22.12■■□□□ 1.13
PCDHGA1Q9Y5H4 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC22.12■■□□□ 1.13
PCDHGA1Q9Y5H4 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC22.12■■□□□ 1.13
PCDHGA1Q9Y5H4 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC22.12■■□□□ 1.13
PCDHGA1Q9Y5H4 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
PCDHGA1Q9Y5H4 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
PCDHGA1Q9Y5H4 C17orf82-201ENST00000623772 1530 ntBASIC22.11■■□□□ 1.13
PCDHGA1Q9Y5H4 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
PCDHGA1Q9Y5H4 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC22.1■■□□□ 1.13
PCDHGA1Q9Y5H4 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
PCDHGA1Q9Y5H4 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
PCDHGA1Q9Y5H4 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC22.1■■□□□ 1.13
PCDHGA1Q9Y5H4 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
PCDHGA1Q9Y5H4 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC22.1■■□□□ 1.13
PCDHGA1Q9Y5H4 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
PCDHGA1Q9Y5H4 AC010501.1-201ENST00000606270 1962 ntBASIC22.1■■□□□ 1.13
PCDHGA1Q9Y5H4 ERN1-208ENST00000606895 2068 ntBASIC22.1■■□□□ 1.13
PCDHGA1Q9Y5H4 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC22.09■■□□□ 1.13
PCDHGA1Q9Y5H4 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC22.09■■□□□ 1.13
PCDHGA1Q9Y5H4 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
PCDHGA1Q9Y5H4 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
PCDHGA1Q9Y5H4 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
PCDHGA1Q9Y5H4 AC034268.1-201ENST00000441047 882 ntBASIC22.09■■□□□ 1.13
PCDHGA1Q9Y5H4 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
PCDHGA1Q9Y5H4 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC22.09■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms