Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC28.19■■■□□ 2.1
ZC3H4Q9UPT8 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC28.19■■■□□ 2.1
ZC3H4Q9UPT8 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC28.19■■■□□ 2.1
ZC3H4Q9UPT8 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC28.19■■■□□ 2.1
ZC3H4Q9UPT8 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
ZC3H4Q9UPT8 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC28.19■■■□□ 2.1
ZC3H4Q9UPT8 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
ZC3H4Q9UPT8 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC28.19■■■□□ 2.1
ZC3H4Q9UPT8 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC28.18■■■□□ 2.1
ZC3H4Q9UPT8 HLA-L-209ENST00000420110 1011 ntBASIC28.18■■■□□ 2.1
ZC3H4Q9UPT8 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
ZC3H4Q9UPT8 AC241377.3-202ENST00000626088 1088 ntBASIC28.18■■■□□ 2.1
ZC3H4Q9UPT8 AC241585.3-202ENST00000628937 1088 ntBASIC28.18■■■□□ 2.1
ZC3H4Q9UPT8 AC245100.8-202ENST00000629247 1058 ntBASIC28.18■■■□□ 2.1
ZC3H4Q9UPT8 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC28.18■■■□□ 2.1
ZC3H4Q9UPT8 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
ZC3H4Q9UPT8 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC28.18■■■□□ 2.1
ZC3H4Q9UPT8 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
ZC3H4Q9UPT8 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC28.18■■■□□ 2.1
ZC3H4Q9UPT8 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
ZC3H4Q9UPT8 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
ZC3H4Q9UPT8 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
ZC3H4Q9UPT8 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC28.17■■■□□ 2.1
ZC3H4Q9UPT8 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC28.17■■■□□ 2.1
ZC3H4Q9UPT8 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC28.17■■■□□ 2.1
ZC3H4Q9UPT8 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC28.16■■■□□ 2.1
ZC3H4Q9UPT8 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
ZC3H4Q9UPT8 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
ZC3H4Q9UPT8 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC28.16■■■□□ 2.1
ZC3H4Q9UPT8 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC28.16■■■□□ 2.1
ZC3H4Q9UPT8 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC28.16■■■□□ 2.1
ZC3H4Q9UPT8 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
ZC3H4Q9UPT8 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
ZC3H4Q9UPT8 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC28.15■■■□□ 2.1
ZC3H4Q9UPT8 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC28.15■■■□□ 2.1
ZC3H4Q9UPT8 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC28.15■■■□□ 2.1
ZC3H4Q9UPT8 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
ZC3H4Q9UPT8 REST-206ENST00000612429 1376 ntTSL 5 BASIC28.15■■■□□ 2.1
ZC3H4Q9UPT8 REST-207ENST00000616975 1370 ntTSL 5 BASIC28.15■■■□□ 2.1
ZC3H4Q9UPT8 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
ZC3H4Q9UPT8 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC28.15■■■□□ 2.1
ZC3H4Q9UPT8 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
ZC3H4Q9UPT8 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC28.15■■■□□ 2.1
ZC3H4Q9UPT8 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
ZC3H4Q9UPT8 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
ZC3H4Q9UPT8 NME4-202ENST00000382940 766 ntTSL 3 BASIC28.15■■■□□ 2.1
ZC3H4Q9UPT8 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC28.15■■■□□ 2.1
ZC3H4Q9UPT8 NME4-211ENST00000620944 1193 ntTSL 2 BASIC28.15■■■□□ 2.1
ZC3H4Q9UPT8 AL358852.1-201ENST00000623174 1268 ntBASIC28.15■■■□□ 2.1
ZC3H4Q9UPT8 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC28.15■■■□□ 2.1
ZC3H4Q9UPT8 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
ZC3H4Q9UPT8 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
ZC3H4Q9UPT8 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC28.14■■■□□ 2.09
ZC3H4Q9UPT8 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC28.14■■■□□ 2.09
ZC3H4Q9UPT8 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC28.13■■■□□ 2.09
ZC3H4Q9UPT8 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC28.13■■■□□ 2.09
ZC3H4Q9UPT8 AP004609.3-201ENST00000610705 1884 ntBASIC28.13■■■□□ 2.09
ZC3H4Q9UPT8 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
ZC3H4Q9UPT8 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
ZC3H4Q9UPT8 SNX3-202ENST00000349379 890 ntTSL 2 BASIC28.13■■■□□ 2.09
ZC3H4Q9UPT8 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC28.12■■■□□ 2.09
ZC3H4Q9UPT8 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
ZC3H4Q9UPT8 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
ZC3H4Q9UPT8 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC28.12■■■□□ 2.09
ZC3H4Q9UPT8 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
ZC3H4Q9UPT8 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
ZC3H4Q9UPT8 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
ZC3H4Q9UPT8 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC28.11■■■□□ 2.09
ZC3H4Q9UPT8 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
ZC3H4Q9UPT8 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC28.11■■■□□ 2.09
ZC3H4Q9UPT8 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC28.11■■■□□ 2.09
ZC3H4Q9UPT8 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
ZC3H4Q9UPT8 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC28.1■■■□□ 2.09
ZC3H4Q9UPT8 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
ZC3H4Q9UPT8 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
ZC3H4Q9UPT8 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC28.1■■■□□ 2.09
ZC3H4Q9UPT8 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC28.09■■■□□ 2.09
ZC3H4Q9UPT8 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
ZC3H4Q9UPT8 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
ZC3H4Q9UPT8 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC28.09■■■□□ 2.09
ZC3H4Q9UPT8 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
ZC3H4Q9UPT8 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
ZC3H4Q9UPT8 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC28.09■■■□□ 2.09
ZC3H4Q9UPT8 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC28.09■■■□□ 2.09
ZC3H4Q9UPT8 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC28.09■■■□□ 2.09
ZC3H4Q9UPT8 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC28.08■■■□□ 2.09
ZC3H4Q9UPT8 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
ZC3H4Q9UPT8 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
ZC3H4Q9UPT8 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC28.08■■■□□ 2.09
ZC3H4Q9UPT8 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC28.08■■■□□ 2.09
ZC3H4Q9UPT8 AC009102.2-201ENST00000606772 1639 ntBASIC28.08■■■□□ 2.09
ZC3H4Q9UPT8 C17orf82-201ENST00000623772 1530 ntBASIC28.08■■■□□ 2.09
ZC3H4Q9UPT8 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
ZC3H4Q9UPT8 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
ZC3H4Q9UPT8 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC28.07■■■□□ 2.08
ZC3H4Q9UPT8 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC28.07■■■□□ 2.08
ZC3H4Q9UPT8 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC28.07■■■□□ 2.08
ZC3H4Q9UPT8 GXYLT1P2-201ENST00000433312 1230 ntBASIC28.07■■■□□ 2.08
ZC3H4Q9UPT8 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
ZC3H4Q9UPT8 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC28.07■■■□□ 2.08
Retrieved 100 of 98,524 protein–RNA pairs in 15.8 ms