Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC21.66■■□□□ 1.06
PTCHD1Q96NR3 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PTCHD1Q96NR3 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC21.66■■□□□ 1.06
PTCHD1Q96NR3 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC21.66■■□□□ 1.06
PTCHD1Q96NR3 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC21.66■■□□□ 1.06
PTCHD1Q96NR3 SNX5-217ENST00000606557 1087 ntBASIC21.66■■□□□ 1.06
PTCHD1Q96NR3 AC010997.5-201ENST00000609182 354 ntBASIC21.66■■□□□ 1.06
PTCHD1Q96NR3 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC21.65■■□□□ 1.06
PTCHD1Q96NR3 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
PTCHD1Q96NR3 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC21.65■■□□□ 1.06
PTCHD1Q96NR3 STK32C-205ENST00000456004 607 ntTSL 2 BASIC21.65■■□□□ 1.06
PTCHD1Q96NR3 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC21.65■■□□□ 1.06
PTCHD1Q96NR3 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
PTCHD1Q96NR3 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PTCHD1Q96NR3 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PTCHD1Q96NR3 AL022069.1-201ENST00000568025 1636 ntBASIC21.65■■□□□ 1.06
PTCHD1Q96NR3 AC131274.2-201ENST00000580697 1507 ntBASIC21.65■■□□□ 1.06
PTCHD1Q96NR3 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
PTCHD1Q96NR3 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
PTCHD1Q96NR3 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
PTCHD1Q96NR3 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
PTCHD1Q96NR3 PKM-204ENST00000449901 2526 ntTSL 2 BASIC21.64■■□□□ 1.06
PTCHD1Q96NR3 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC21.64■■□□□ 1.05
PTCHD1Q96NR3 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC21.64■■□□□ 1.05
PTCHD1Q96NR3 AC004448.1-201ENST00000458332 883 ntBASIC21.64■■□□□ 1.05
PTCHD1Q96NR3 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC21.64■■□□□ 1.05
PTCHD1Q96NR3 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC21.64■■□□□ 1.05
PTCHD1Q96NR3 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
PTCHD1Q96NR3 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PTCHD1Q96NR3 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
PTCHD1Q96NR3 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
PTCHD1Q96NR3 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
PTCHD1Q96NR3 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
PTCHD1Q96NR3 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
PTCHD1Q96NR3 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC21.62■■□□□ 1.05
PTCHD1Q96NR3 TMEM202-AS1-202ENST00000565181 2325 ntBASIC21.62■■□□□ 1.05
PTCHD1Q96NR3 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PTCHD1Q96NR3 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PTCHD1Q96NR3 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC21.62■■□□□ 1.05
PTCHD1Q96NR3 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC21.62■■□□□ 1.05
PTCHD1Q96NR3 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
PTCHD1Q96NR3 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
PTCHD1Q96NR3 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
PTCHD1Q96NR3 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
PTCHD1Q96NR3 AL139125.2-201ENST00000623134 1869 ntBASIC21.61■■□□□ 1.05
PTCHD1Q96NR3 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
PTCHD1Q96NR3 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
PTCHD1Q96NR3 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PTCHD1Q96NR3 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PTCHD1Q96NR3 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
PTCHD1Q96NR3 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PTCHD1Q96NR3 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
PTCHD1Q96NR3 AC093323.1-202ENST00000635031 2045 ntBASIC21.6■■□□□ 1.05
PTCHD1Q96NR3 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PTCHD1Q96NR3 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC21.6■■□□□ 1.05
PTCHD1Q96NR3 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC21.6■■□□□ 1.05
PTCHD1Q96NR3 EXOG-217ENST00000630638 197 ntTSL 5 BASIC21.6■■□□□ 1.05
PTCHD1Q96NR3 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
PTCHD1Q96NR3 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
PTCHD1Q96NR3 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC21.6■■□□□ 1.05
PTCHD1Q96NR3 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PTCHD1Q96NR3 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
PTCHD1Q96NR3 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
PTCHD1Q96NR3 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
PTCHD1Q96NR3 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC21.59■■□□□ 1.05
PTCHD1Q96NR3 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PTCHD1Q96NR3 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
PTCHD1Q96NR3 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
PTCHD1Q96NR3 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
PTCHD1Q96NR3 EED-207ENST00000528180 1745 ntTSL 5 BASIC21.59■■□□□ 1.05
PTCHD1Q96NR3 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC21.59■■□□□ 1.05
PTCHD1Q96NR3 AC131212.1-201ENST00000613771 668 ntBASIC21.59■■□□□ 1.05
PTCHD1Q96NR3 MIR6722-201ENST00000617286 78 ntBASIC21.59■■□□□ 1.05
PTCHD1Q96NR3 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC21.59■■□□□ 1.05
PTCHD1Q96NR3 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC21.58■■□□□ 1.05
PTCHD1Q96NR3 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
PTCHD1Q96NR3 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
PTCHD1Q96NR3 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
PTCHD1Q96NR3 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
PTCHD1Q96NR3 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
PTCHD1Q96NR3 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC21.58■■□□□ 1.05
PTCHD1Q96NR3 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
PTCHD1Q96NR3 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC21.58■■□□□ 1.04
PTCHD1Q96NR3 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
PTCHD1Q96NR3 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
PTCHD1Q96NR3 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
PTCHD1Q96NR3 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC21.57■■□□□ 1.04
PTCHD1Q96NR3 LSM4-201ENST00000252816 986 ntTSL 2 BASIC21.57■■□□□ 1.04
PTCHD1Q96NR3 MIR6724-1-201ENST00000616420 92 ntBASIC21.57■■□□□ 1.04
PTCHD1Q96NR3 MIR6724-2-201ENST00000616483 92 ntBASIC21.57■■□□□ 1.04
PTCHD1Q96NR3 MIR6724-4-201ENST00000617390 92 ntBASIC21.57■■□□□ 1.04
PTCHD1Q96NR3 MIR6724-3-201ENST00000622482 92 ntBASIC21.57■■□□□ 1.04
PTCHD1Q96NR3 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC21.57■■□□□ 1.04
PTCHD1Q96NR3 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
PTCHD1Q96NR3 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
PTCHD1Q96NR3 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PTCHD1Q96NR3 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PTCHD1Q96NR3 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
PTCHD1Q96NR3 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC21.56■■□□□ 1.04
PTCHD1Q96NR3 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms