Protein–RNA interactions for Protein: Q96K76

USP47, Ubiquitin carboxyl-terminal hydrolase 47, humanhuman

Predictions only

Length 1,375 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP47Q96K76 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC32.44■■■□□ 2.78
USP47Q96K76 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC32.44■■■□□ 2.78
USP47Q96K76 MTURN-203ENST00000409688 843 ntTSL 2 BASIC32.44■■■□□ 2.78
USP47Q96K76 AL356441.2-201ENST00000443009 864 ntBASIC32.44■■■□□ 2.78
USP47Q96K76 STK32C-205ENST00000456004 607 ntTSL 2 BASIC32.44■■■□□ 2.78
USP47Q96K76 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC32.44■■■□□ 2.78
USP47Q96K76 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC32.43■■■□□ 2.78
USP47Q96K76 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC32.43■■■□□ 2.78
USP47Q96K76 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC32.43■■■□□ 2.78
USP47Q96K76 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC32.43■■■□□ 2.78
USP47Q96K76 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC32.43■■■□□ 2.78
USP47Q96K76 MTDHP2-201ENST00000601468 714 ntBASIC32.43■■■□□ 2.78
USP47Q96K76 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC32.42■■■□□ 2.78
USP47Q96K76 LINC00543-201ENST00000567234 1845 ntBASIC32.42■■■□□ 2.78
USP47Q96K76 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC32.42■■■□□ 2.78
USP47Q96K76 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC32.42■■■□□ 2.78
USP47Q96K76 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC32.42■■■□□ 2.78
USP47Q96K76 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC32.42■■■□□ 2.78
USP47Q96K76 CLTA-206ENST00000466396 695 ntTSL 2 BASIC32.42■■■□□ 2.78
USP47Q96K76 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC32.42■■■□□ 2.78
USP47Q96K76 LSM7-203ENST00000585409 512 ntTSL 2 BASIC32.42■■■□□ 2.78
USP47Q96K76 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
USP47Q96K76 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC32.42■■■□□ 2.78
USP47Q96K76 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC32.41■■■□□ 2.78
USP47Q96K76 KRT16P3-201ENST00000439127 1283 ntBASIC32.41■■■□□ 2.78
USP47Q96K76 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC32.41■■■□□ 2.78
USP47Q96K76 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC32.41■■■□□ 2.78
USP47Q96K76 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC32.41■■■□□ 2.78
USP47Q96K76 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC32.41■■■□□ 2.78
USP47Q96K76 AL161729.1-201ENST00000604104 1402 ntBASIC32.41■■■□□ 2.78
USP47Q96K76 LSM4-201ENST00000252816 986 ntTSL 2 BASIC32.4■■■□□ 2.78
USP47Q96K76 AC131212.1-201ENST00000613771 668 ntBASIC32.4■■■□□ 2.78
USP47Q96K76 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC32.4■■■□□ 2.78
USP47Q96K76 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC32.4■■■□□ 2.78
USP47Q96K76 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC32.4■■■□□ 2.78
USP47Q96K76 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
USP47Q96K76 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC32.39■■■□□ 2.78
USP47Q96K76 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC32.39■■■□□ 2.78
USP47Q96K76 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC32.39■■■□□ 2.78
USP47Q96K76 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC32.39■■■□□ 2.78
USP47Q96K76 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC32.39■■■□□ 2.78
USP47Q96K76 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC32.39■■■□□ 2.78
USP47Q96K76 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC32.39■■■□□ 2.78
USP47Q96K76 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC32.38■■■□□ 2.77
USP47Q96K76 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC32.38■■■□□ 2.77
USP47Q96K76 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC32.38■■■□□ 2.77
USP47Q96K76 GRAMD4P7-201ENST00000578182 1232 ntBASIC32.38■■■□□ 2.77
USP47Q96K76 AC010997.5-201ENST00000609182 354 ntBASIC32.38■■■□□ 2.77
USP47Q96K76 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC32.38■■■□□ 2.77
USP47Q96K76 AC141586.4-201ENST00000624558 1573 ntBASIC32.38■■■□□ 2.77
USP47Q96K76 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC32.37■■■□□ 2.77
USP47Q96K76 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC32.37■■■□□ 2.77
USP47Q96K76 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC32.37■■■□□ 2.77
USP47Q96K76 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC32.37■■■□□ 2.77
USP47Q96K76 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC32.37■■■□□ 2.77
USP47Q96K76 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC32.37■■■□□ 2.77
USP47Q96K76 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC32.36■■■□□ 2.77
USP47Q96K76 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC32.36■■■□□ 2.77
USP47Q96K76 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC32.36■■■□□ 2.77
USP47Q96K76 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC32.36■■■□□ 2.77
USP47Q96K76 CD72-202ENST00000378430 585 ntTSL 3 BASIC32.36■■■□□ 2.77
USP47Q96K76 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC32.36■■■□□ 2.77
USP47Q96K76 MIR6722-201ENST00000617286 78 ntBASIC32.36■■■□□ 2.77
USP47Q96K76 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC32.35■■■□□ 2.77
USP47Q96K76 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
USP47Q96K76 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC32.35■■■□□ 2.77
USP47Q96K76 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC32.35■■■□□ 2.77
USP47Q96K76 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC32.35■■■□□ 2.77
USP47Q96K76 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC32.34■■■□□ 2.77
USP47Q96K76 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC32.33■■■□□ 2.77
USP47Q96K76 EXOG-217ENST00000630638 197 ntTSL 5 BASIC32.33■■■□□ 2.77
USP47Q96K76 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC32.33■■■□□ 2.77
USP47Q96K76 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC32.33■■■□□ 2.77
USP47Q96K76 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.77
USP47Q96K76 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC32.32■■■□□ 2.77
USP47Q96K76 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC32.32■■■□□ 2.76
USP47Q96K76 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC32.32■■■□□ 2.76
USP47Q96K76 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC32.32■■■□□ 2.76
USP47Q96K76 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC32.32■■■□□ 2.76
USP47Q96K76 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC32.32■■■□□ 2.76
USP47Q96K76 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
USP47Q96K76 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC32.32■■■□□ 2.76
USP47Q96K76 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC32.31■■■□□ 2.76
USP47Q96K76 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC32.31■■■□□ 2.76
USP47Q96K76 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC32.31■■■□□ 2.76
USP47Q96K76 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC32.31■■■□□ 2.76
USP47Q96K76 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
USP47Q96K76 AC004812.2-201ENST00000611079 2094 ntBASIC32.3■■■□□ 2.76
USP47Q96K76 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC32.3■■■□□ 2.76
USP47Q96K76 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC32.3■■■□□ 2.76
USP47Q96K76 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC32.3■■■□□ 2.76
USP47Q96K76 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC32.29■■■□□ 2.76
USP47Q96K76 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC32.29■■■□□ 2.76
USP47Q96K76 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC32.29■■■□□ 2.76
USP47Q96K76 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC32.29■■■□□ 2.76
USP47Q96K76 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC32.29■■■□□ 2.76
USP47Q96K76 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
USP47Q96K76 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
USP47Q96K76 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC32.28■■■□□ 2.76
USP47Q96K76 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms