Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC21.3■■□□□ 1
BEST3Q8N1M1 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC21.3■■□□□ 1
BEST3Q8N1M1 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
BEST3Q8N1M1 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC21.3■■□□□ 1
BEST3Q8N1M1 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC21.3■■□□□ 1
BEST3Q8N1M1 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC21.29■■□□□ 1
BEST3Q8N1M1 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC21.29■■□□□ 1
BEST3Q8N1M1 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC21.29■■□□□ 1
BEST3Q8N1M1 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC21.29■■□□□ 1
BEST3Q8N1M1 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC21.29■■□□□ 1
BEST3Q8N1M1 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
BEST3Q8N1M1 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
BEST3Q8N1M1 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC21.28■■□□□ 1
BEST3Q8N1M1 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
BEST3Q8N1M1 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC21.28■■□□□ 1
BEST3Q8N1M1 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
BEST3Q8N1M1 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC21.28■■□□□ 1
BEST3Q8N1M1 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
BEST3Q8N1M1 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC21.28■■□□□ 1
BEST3Q8N1M1 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC21.28■■□□□ 1
BEST3Q8N1M1 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
BEST3Q8N1M1 AL512631.2-201ENST00000604634 923 ntBASIC21.28■■□□□ 1
BEST3Q8N1M1 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC21.28■■□□□ 1
BEST3Q8N1M1 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC21.28■■□□□ 1
BEST3Q8N1M1 RASSF1-AS1-201ENST00000629828 790 ntBASIC21.28■■□□□ 1
BEST3Q8N1M1 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC21.28■■□□□ 1
BEST3Q8N1M1 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
BEST3Q8N1M1 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC21.28■■□□□ 1
BEST3Q8N1M1 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
BEST3Q8N1M1 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
BEST3Q8N1M1 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
BEST3Q8N1M1 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
BEST3Q8N1M1 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
BEST3Q8N1M1 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
BEST3Q8N1M1 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
BEST3Q8N1M1 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
BEST3Q8N1M1 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
BEST3Q8N1M1 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
BEST3Q8N1M1 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
BEST3Q8N1M1 NALT1-201ENST00000429224 738 ntTSL 5 BASIC21.26■□□□□ 0.99
BEST3Q8N1M1 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC21.26■□□□□ 0.99
BEST3Q8N1M1 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC21.26■□□□□ 0.99
BEST3Q8N1M1 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
BEST3Q8N1M1 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC21.25■□□□□ 0.99
BEST3Q8N1M1 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
BEST3Q8N1M1 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
BEST3Q8N1M1 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
BEST3Q8N1M1 LSR-205ENST00000427250 1606 ntTSL 2 BASIC21.25■□□□□ 0.99
BEST3Q8N1M1 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
BEST3Q8N1M1 AC131274.2-201ENST00000580697 1507 ntBASIC21.24■□□□□ 0.99
BEST3Q8N1M1 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
BEST3Q8N1M1 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
BEST3Q8N1M1 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC21.24■□□□□ 0.99
BEST3Q8N1M1 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC21.24■□□□□ 0.99
BEST3Q8N1M1 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
BEST3Q8N1M1 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
BEST3Q8N1M1 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
BEST3Q8N1M1 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
BEST3Q8N1M1 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
BEST3Q8N1M1 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
BEST3Q8N1M1 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
BEST3Q8N1M1 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
BEST3Q8N1M1 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC21.23■□□□□ 0.99
BEST3Q8N1M1 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
BEST3Q8N1M1 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
BEST3Q8N1M1 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
BEST3Q8N1M1 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
BEST3Q8N1M1 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
BEST3Q8N1M1 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
BEST3Q8N1M1 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
BEST3Q8N1M1 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
BEST3Q8N1M1 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
BEST3Q8N1M1 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC21.22■□□□□ 0.99
BEST3Q8N1M1 AL139246.5-201ENST00000606645 996 ntBASIC21.22■□□□□ 0.99
BEST3Q8N1M1 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
BEST3Q8N1M1 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC21.22■□□□□ 0.99
BEST3Q8N1M1 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC21.22■□□□□ 0.99
BEST3Q8N1M1 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC21.22■□□□□ 0.99
BEST3Q8N1M1 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
BEST3Q8N1M1 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC21.21■□□□□ 0.99
BEST3Q8N1M1 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
BEST3Q8N1M1 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
BEST3Q8N1M1 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
BEST3Q8N1M1 STK32C-205ENST00000456004 607 ntTSL 2 BASIC21.21■□□□□ 0.99
BEST3Q8N1M1 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
BEST3Q8N1M1 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
BEST3Q8N1M1 RALB-208ENST00000631312 311 ntTSL 5 BASIC21.21■□□□□ 0.99
BEST3Q8N1M1 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
BEST3Q8N1M1 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.99
BEST3Q8N1M1 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
BEST3Q8N1M1 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
BEST3Q8N1M1 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
BEST3Q8N1M1 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC21.2■□□□□ 0.98
BEST3Q8N1M1 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
BEST3Q8N1M1 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
BEST3Q8N1M1 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
BEST3Q8N1M1 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
BEST3Q8N1M1 AC020928.2-201ENST00000588717 2197 ntBASIC21.2■□□□□ 0.98
BEST3Q8N1M1 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC21.2■□□□□ 0.98
BEST3Q8N1M1 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms