Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC31.72■■■□□ 2.67
NPHP3Q7Z494 BX842568.3-201ENST00000418104 571 ntBASIC31.72■■■□□ 2.67
NPHP3Q7Z494 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC31.72■■■□□ 2.67
NPHP3Q7Z494 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
NPHP3Q7Z494 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
NPHP3Q7Z494 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
NPHP3Q7Z494 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC31.71■■■□□ 2.67
NPHP3Q7Z494 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
NPHP3Q7Z494 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
NPHP3Q7Z494 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
NPHP3Q7Z494 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
NPHP3Q7Z494 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC31.7■■■□□ 2.66
NPHP3Q7Z494 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.66
NPHP3Q7Z494 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC31.7■■■□□ 2.66
NPHP3Q7Z494 YBX1P1-201ENST00000445822 960 ntBASIC31.7■■■□□ 2.66
NPHP3Q7Z494 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC31.7■■■□□ 2.66
NPHP3Q7Z494 AC241377.3-202ENST00000626088 1088 ntBASIC31.7■■■□□ 2.66
NPHP3Q7Z494 AC241585.3-202ENST00000628937 1088 ntBASIC31.7■■■□□ 2.66
NPHP3Q7Z494 AC245100.8-202ENST00000629247 1058 ntBASIC31.7■■■□□ 2.66
NPHP3Q7Z494 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.66
NPHP3Q7Z494 AC096887.2-201ENST00000623443 1957 ntBASIC31.69■■■□□ 2.66
NPHP3Q7Z494 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC31.69■■■□□ 2.66
NPHP3Q7Z494 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC31.69■■■□□ 2.66
NPHP3Q7Z494 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC31.69■■■□□ 2.66
NPHP3Q7Z494 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC31.69■■■□□ 2.66
NPHP3Q7Z494 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC31.69■■■□□ 2.66
NPHP3Q7Z494 SLC47A1P1-202ENST00000449666 945 ntBASIC31.69■■■□□ 2.66
NPHP3Q7Z494 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC31.69■■■□□ 2.66
NPHP3Q7Z494 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC31.69■■■□□ 2.66
NPHP3Q7Z494 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC31.69■■■□□ 2.66
NPHP3Q7Z494 AC131274.2-201ENST00000580697 1507 ntBASIC31.68■■■□□ 2.66
NPHP3Q7Z494 C17orf82-201ENST00000623772 1530 ntBASIC31.68■■■□□ 2.66
NPHP3Q7Z494 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC31.68■■■□□ 2.66
NPHP3Q7Z494 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC31.68■■■□□ 2.66
NPHP3Q7Z494 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
NPHP3Q7Z494 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
NPHP3Q7Z494 GRAMD4P2-201ENST00000423297 1097 ntBASIC31.68■■■□□ 2.66
NPHP3Q7Z494 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC31.68■■■□□ 2.66
NPHP3Q7Z494 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC31.68■■■□□ 2.66
NPHP3Q7Z494 AL031602.1-201ENST00000633169 911 ntBASIC31.68■■■□□ 2.66
NPHP3Q7Z494 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
NPHP3Q7Z494 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
NPHP3Q7Z494 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC31.68■■■□□ 2.66
NPHP3Q7Z494 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC31.67■■■□□ 2.66
NPHP3Q7Z494 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
NPHP3Q7Z494 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC31.67■■■□□ 2.66
NPHP3Q7Z494 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
NPHP3Q7Z494 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC31.67■■■□□ 2.66
NPHP3Q7Z494 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC31.66■■■□□ 2.66
NPHP3Q7Z494 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC31.66■■■□□ 2.66
NPHP3Q7Z494 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
NPHP3Q7Z494 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
NPHP3Q7Z494 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
NPHP3Q7Z494 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
NPHP3Q7Z494 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC31.65■■■□□ 2.66
NPHP3Q7Z494 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC31.65■■■□□ 2.66
NPHP3Q7Z494 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC31.65■■■□□ 2.66
NPHP3Q7Z494 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
NPHP3Q7Z494 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC31.65■■■□□ 2.66
NPHP3Q7Z494 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC31.65■■■□□ 2.66
NPHP3Q7Z494 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC31.64■■■□□ 2.66
NPHP3Q7Z494 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC31.64■■■□□ 2.66
NPHP3Q7Z494 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC31.64■■■□□ 2.66
NPHP3Q7Z494 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC31.64■■■□□ 2.65
NPHP3Q7Z494 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
NPHP3Q7Z494 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
NPHP3Q7Z494 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC31.63■■■□□ 2.65
NPHP3Q7Z494 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
NPHP3Q7Z494 AC006455.2-201ENST00000429931 906 ntBASIC31.62■■■□□ 2.65
NPHP3Q7Z494 DUX4L2-201ENST00000561772 1275 ntBASIC31.62■■■□□ 2.65
NPHP3Q7Z494 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC31.62■■■□□ 2.65
NPHP3Q7Z494 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC31.62■■■□□ 2.65
NPHP3Q7Z494 DUX4L6-201ENST00000626483 1275 ntBASIC31.62■■■□□ 2.65
NPHP3Q7Z494 DUX4L1-201ENST00000627662 1275 ntBASIC31.62■■■□□ 2.65
NPHP3Q7Z494 DUX4L8-201ENST00000629013 1275 ntBASIC31.62■■■□□ 2.65
NPHP3Q7Z494 DUX4L3-201ENST00000630187 1275 ntBASIC31.62■■■□□ 2.65
NPHP3Q7Z494 DUX4L7-201ENST00000630678 1275 ntBASIC31.62■■■□□ 2.65
NPHP3Q7Z494 DUX4L5-201ENST00000630834 1275 ntBASIC31.62■■■□□ 2.65
NPHP3Q7Z494 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
NPHP3Q7Z494 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC31.61■■■□□ 2.65
NPHP3Q7Z494 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
NPHP3Q7Z494 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC31.61■■■□□ 2.65
NPHP3Q7Z494 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC31.61■■■□□ 2.65
NPHP3Q7Z494 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
NPHP3Q7Z494 SNX3-202ENST00000349379 890 ntTSL 2 BASIC31.6■■■□□ 2.65
NPHP3Q7Z494 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC31.6■■■□□ 2.65
NPHP3Q7Z494 STK32C-205ENST00000456004 607 ntTSL 2 BASIC31.6■■■□□ 2.65
NPHP3Q7Z494 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC31.6■■■□□ 2.65
NPHP3Q7Z494 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
NPHP3Q7Z494 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC31.6■■■□□ 2.65
NPHP3Q7Z494 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC31.59■■■□□ 2.65
NPHP3Q7Z494 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
NPHP3Q7Z494 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
NPHP3Q7Z494 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
NPHP3Q7Z494 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC31.59■■■□□ 2.65
NPHP3Q7Z494 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
NPHP3Q7Z494 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
NPHP3Q7Z494 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC31.58■■■□□ 2.65
NPHP3Q7Z494 MIR3181-201ENST00000578512 73 ntBASIC31.58■■■□□ 2.65
NPHP3Q7Z494 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC31.57■■■□□ 2.64
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms