Protein–RNA interactions for Protein: Q5SRH9

TTC39A, Tetratricopeptide repeat protein 39A, humanhuman

Predictions only

Length 613 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC39AQ5SRH9 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
TTC39AQ5SRH9 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
TTC39AQ5SRH9 AC135731.1-201ENST00000569415 2548 ntBASIC28.1■■■□□ 2.09
TTC39AQ5SRH9 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC28.1■■■□□ 2.09
TTC39AQ5SRH9 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC28.1■■■□□ 2.09
TTC39AQ5SRH9 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC28.1■■■□□ 2.09
TTC39AQ5SRH9 AL117332.1-201ENST00000622628 974 ntBASIC28.1■■■□□ 2.09
TTC39AQ5SRH9 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC28.1■■■□□ 2.09
TTC39AQ5SRH9 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
TTC39AQ5SRH9 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC28.1■■■□□ 2.09
TTC39AQ5SRH9 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC28.1■■■□□ 2.09
TTC39AQ5SRH9 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC28.1■■■□□ 2.09
TTC39AQ5SRH9 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC28.1■■■□□ 2.09
TTC39AQ5SRH9 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC28.09■■■□□ 2.09
TTC39AQ5SRH9 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC28.09■■■□□ 2.09
TTC39AQ5SRH9 TFPT-201ENST00000391757 774 ntTSL 5 BASIC28.09■■■□□ 2.09
TTC39AQ5SRH9 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC28.09■■■□□ 2.09
TTC39AQ5SRH9 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC28.09■■■□□ 2.09
TTC39AQ5SRH9 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC28.09■■■□□ 2.09
TTC39AQ5SRH9 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC28.09■■■□□ 2.09
TTC39AQ5SRH9 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
TTC39AQ5SRH9 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
TTC39AQ5SRH9 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC28.08■■■□□ 2.09
TTC39AQ5SRH9 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
TTC39AQ5SRH9 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC28.08■■■□□ 2.09
TTC39AQ5SRH9 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
TTC39AQ5SRH9 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC28.07■■■□□ 2.08
TTC39AQ5SRH9 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC28.07■■■□□ 2.08
TTC39AQ5SRH9 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC28.07■■■□□ 2.08
TTC39AQ5SRH9 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
TTC39AQ5SRH9 TMEM202-AS1-202ENST00000565181 2325 ntBASIC28.07■■■□□ 2.08
TTC39AQ5SRH9 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC28.06■■■□□ 2.08
TTC39AQ5SRH9 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC28.06■■■□□ 2.08
TTC39AQ5SRH9 AK3-203ENST00000447596 705 ntTSL 2 BASIC28.06■■■□□ 2.08
TTC39AQ5SRH9 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC28.06■■■□□ 2.08
TTC39AQ5SRH9 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC28.06■■■□□ 2.08
TTC39AQ5SRH9 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
TTC39AQ5SRH9 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
TTC39AQ5SRH9 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC28.05■■■□□ 2.08
TTC39AQ5SRH9 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC28.05■■■□□ 2.08
TTC39AQ5SRH9 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC28.05■■■□□ 2.08
TTC39AQ5SRH9 SRR-208ENST00000576848 588 ntTSL 4 BASIC28.05■■■□□ 2.08
TTC39AQ5SRH9 TRIR-202ENST00000588213 841 ntTSL 3 BASIC28.05■■■□□ 2.08
TTC39AQ5SRH9 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC28.04■■■□□ 2.08
TTC39AQ5SRH9 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC28.04■■■□□ 2.08
TTC39AQ5SRH9 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC28.04■■■□□ 2.08
TTC39AQ5SRH9 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC28.04■■■□□ 2.08
TTC39AQ5SRH9 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC28.04■■■□□ 2.08
TTC39AQ5SRH9 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
TTC39AQ5SRH9 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC28.04■■■□□ 2.08
TTC39AQ5SRH9 MIR3621-201ENST00000580529 85 ntBASIC28.04■■■□□ 2.08
TTC39AQ5SRH9 AL356740.2-201ENST00000601559 647 ntBASIC28.04■■■□□ 2.08
TTC39AQ5SRH9 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
TTC39AQ5SRH9 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC28.04■■■□□ 2.08
TTC39AQ5SRH9 CD37-213ENST00000598095 1598 ntTSL 2 BASIC28.03■■■□□ 2.08
TTC39AQ5SRH9 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
TTC39AQ5SRH9 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC28.03■■■□□ 2.08
TTC39AQ5SRH9 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC28.03■■■□□ 2.08
TTC39AQ5SRH9 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC28.03■■■□□ 2.08
TTC39AQ5SRH9 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC28.03■■■□□ 2.08
TTC39AQ5SRH9 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC28.03■■■□□ 2.08
TTC39AQ5SRH9 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC28.03■■■□□ 2.08
TTC39AQ5SRH9 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
TTC39AQ5SRH9 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
TTC39AQ5SRH9 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC28.02■■■□□ 2.08
TTC39AQ5SRH9 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC28.02■■■□□ 2.08
TTC39AQ5SRH9 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC28.02■■■□□ 2.08
TTC39AQ5SRH9 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC28.02■■■□□ 2.08
TTC39AQ5SRH9 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
TTC39AQ5SRH9 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
TTC39AQ5SRH9 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC28.02■■■□□ 2.08
TTC39AQ5SRH9 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC28.02■■■□□ 2.08
TTC39AQ5SRH9 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.08
TTC39AQ5SRH9 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC28.01■■■□□ 2.08
TTC39AQ5SRH9 REST-206ENST00000612429 1376 ntTSL 5 BASIC28.01■■■□□ 2.07
TTC39AQ5SRH9 REST-207ENST00000616975 1370 ntTSL 5 BASIC28.01■■■□□ 2.07
TTC39AQ5SRH9 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC28.01■■■□□ 2.07
TTC39AQ5SRH9 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
TTC39AQ5SRH9 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC28.01■■■□□ 2.07
TTC39AQ5SRH9 RPP21-222ENST00000433076 577 ntTSL 2 BASIC28.01■■■□□ 2.07
TTC39AQ5SRH9 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC28.01■■■□□ 2.07
TTC39AQ5SRH9 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC28.01■■■□□ 2.07
TTC39AQ5SRH9 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
TTC39AQ5SRH9 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC28■■■□□ 2.07
TTC39AQ5SRH9 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC28■■■□□ 2.07
TTC39AQ5SRH9 AL161729.1-201ENST00000604104 1402 ntBASIC28■■■□□ 2.07
TTC39AQ5SRH9 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC28■■■□□ 2.07
TTC39AQ5SRH9 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC27.99■■■□□ 2.07
TTC39AQ5SRH9 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC27.99■■■□□ 2.07
TTC39AQ5SRH9 EED-207ENST00000528180 1745 ntTSL 5 BASIC27.99■■■□□ 2.07
TTC39AQ5SRH9 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC27.99■■■□□ 2.07
TTC39AQ5SRH9 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC27.99■■■□□ 2.07
TTC39AQ5SRH9 AC008406.3-201ENST00000620001 1374 ntBASIC27.99■■■□□ 2.07
TTC39AQ5SRH9 AC005703.6-201ENST00000623265 1329 ntBASIC27.98■■■□□ 2.07
TTC39AQ5SRH9 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
TTC39AQ5SRH9 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
TTC39AQ5SRH9 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC27.98■■■□□ 2.07
TTC39AQ5SRH9 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC27.98■■■□□ 2.07
TTC39AQ5SRH9 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
TTC39AQ5SRH9 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms