Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
PTCHD3Q3KNS1 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
PTCHD3Q3KNS1 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
PTCHD3Q3KNS1 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC22.46■■□□□ 1.19
PTCHD3Q3KNS1 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC22.46■■□□□ 1.19
PTCHD3Q3KNS1 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC22.45■■□□□ 1.19
PTCHD3Q3KNS1 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC22.45■■□□□ 1.19
PTCHD3Q3KNS1 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC22.45■■□□□ 1.19
PTCHD3Q3KNS1 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC22.45■■□□□ 1.18
PTCHD3Q3KNS1 Z92544.1-202ENST00000571933 1220 ntBASIC22.45■■□□□ 1.18
PTCHD3Q3KNS1 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
PTCHD3Q3KNS1 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC22.45■■□□□ 1.18
PTCHD3Q3KNS1 SHD-204ENST00000599689 1729 ntTSL 5 BASIC22.45■■□□□ 1.18
PTCHD3Q3KNS1 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC22.45■■□□□ 1.18
PTCHD3Q3KNS1 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
PTCHD3Q3KNS1 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC22.45■■□□□ 1.18
PTCHD3Q3KNS1 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC22.45■■□□□ 1.18
PTCHD3Q3KNS1 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
PTCHD3Q3KNS1 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
PTCHD3Q3KNS1 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
PTCHD3Q3KNS1 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC22.44■■□□□ 1.18
PTCHD3Q3KNS1 BX664725.1-201ENST00000438252 379 ntBASIC22.44■■□□□ 1.18
PTCHD3Q3KNS1 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
PTCHD3Q3KNS1 AC131212.1-201ENST00000613771 668 ntBASIC22.44■■□□□ 1.18
PTCHD3Q3KNS1 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC22.44■■□□□ 1.18
PTCHD3Q3KNS1 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC22.43■■□□□ 1.18
PTCHD3Q3KNS1 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
PTCHD3Q3KNS1 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
PTCHD3Q3KNS1 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
PTCHD3Q3KNS1 KRT125P-201ENST00000546827 989 ntBASIC22.43■■□□□ 1.18
PTCHD3Q3KNS1 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
PTCHD3Q3KNS1 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC22.43■■□□□ 1.18
PTCHD3Q3KNS1 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC22.42■■□□□ 1.18
PTCHD3Q3KNS1 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
PTCHD3Q3KNS1 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC22.42■■□□□ 1.18
PTCHD3Q3KNS1 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC22.42■■□□□ 1.18
PTCHD3Q3KNS1 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
PTCHD3Q3KNS1 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC22.42■■□□□ 1.18
PTCHD3Q3KNS1 AL356441.2-201ENST00000443009 864 ntBASIC22.42■■□□□ 1.18
PTCHD3Q3KNS1 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC22.42■■□□□ 1.18
PTCHD3Q3KNS1 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
PTCHD3Q3KNS1 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC22.42■■□□□ 1.18
PTCHD3Q3KNS1 ABCB10P4-201ENST00000566803 2184 ntBASIC22.42■■□□□ 1.18
PTCHD3Q3KNS1 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC22.42■■□□□ 1.18
PTCHD3Q3KNS1 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
PTCHD3Q3KNS1 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC22.41■■□□□ 1.18
PTCHD3Q3KNS1 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC22.41■■□□□ 1.18
PTCHD3Q3KNS1 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC22.41■■□□□ 1.18
PTCHD3Q3KNS1 CREM-229ENST00000474362 1030 ntTSL 2 BASIC22.41■■□□□ 1.18
PTCHD3Q3KNS1 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
PTCHD3Q3KNS1 MIR4787-201ENST00000607364 84 ntBASIC22.41■■□□□ 1.18
PTCHD3Q3KNS1 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
PTCHD3Q3KNS1 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
PTCHD3Q3KNS1 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC22.41■■□□□ 1.18
PTCHD3Q3KNS1 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC22.4■■□□□ 1.18
PTCHD3Q3KNS1 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC22.4■■□□□ 1.18
PTCHD3Q3KNS1 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
PTCHD3Q3KNS1 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC22.4■■□□□ 1.18
PTCHD3Q3KNS1 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
PTCHD3Q3KNS1 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC22.4■■□□□ 1.18
PTCHD3Q3KNS1 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC22.4■■□□□ 1.18
PTCHD3Q3KNS1 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
PTCHD3Q3KNS1 MIR4281-201ENST00000580852 62 ntBASIC22.39■■□□□ 1.17
PTCHD3Q3KNS1 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC22.39■■□□□ 1.17
PTCHD3Q3KNS1 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.17
PTCHD3Q3KNS1 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC22.39■■□□□ 1.17
PTCHD3Q3KNS1 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
PTCHD3Q3KNS1 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
PTCHD3Q3KNS1 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
PTCHD3Q3KNS1 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
PTCHD3Q3KNS1 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
PTCHD3Q3KNS1 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC22.38■■□□□ 1.17
PTCHD3Q3KNS1 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
PTCHD3Q3KNS1 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC22.38■■□□□ 1.17
PTCHD3Q3KNS1 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC22.37■■□□□ 1.17
PTCHD3Q3KNS1 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
PTCHD3Q3KNS1 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC22.37■■□□□ 1.17
PTCHD3Q3KNS1 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC22.37■■□□□ 1.17
PTCHD3Q3KNS1 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC22.37■■□□□ 1.17
PTCHD3Q3KNS1 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
PTCHD3Q3KNS1 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC22.37■■□□□ 1.17
PTCHD3Q3KNS1 CD37-213ENST00000598095 1598 ntTSL 2 BASIC22.37■■□□□ 1.17
PTCHD3Q3KNS1 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
PTCHD3Q3KNS1 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
PTCHD3Q3KNS1 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC22.36■■□□□ 1.17
PTCHD3Q3KNS1 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
PTCHD3Q3KNS1 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC22.36■■□□□ 1.17
PTCHD3Q3KNS1 AC137630.3-201ENST00000607245 391 ntBASIC22.36■■□□□ 1.17
PTCHD3Q3KNS1 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
PTCHD3Q3KNS1 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC22.36■■□□□ 1.17
PTCHD3Q3KNS1 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC22.36■■□□□ 1.17
PTCHD3Q3KNS1 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
PTCHD3Q3KNS1 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
PTCHD3Q3KNS1 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC22.35■■□□□ 1.17
PTCHD3Q3KNS1 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC22.35■■□□□ 1.17
PTCHD3Q3KNS1 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC22.35■■□□□ 1.17
PTCHD3Q3KNS1 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
PTCHD3Q3KNS1 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC22.35■■□□□ 1.17
PTCHD3Q3KNS1 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC22.35■■□□□ 1.17
PTCHD3Q3KNS1 AL022069.1-201ENST00000568025 1636 ntBASIC22.35■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms