Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
PRKDCP78527 GAS2L1P2-201ENST00000436355 1356 ntBASIC17.02■□□□□ 0.32
PRKDCP78527 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
PRKDCP78527 GXYLT1P2-201ENST00000433312 1230 ntBASIC17.02■□□□□ 0.31
PRKDCP78527 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
PRKDCP78527 SNX3-202ENST00000349379 890 ntTSL 2 BASIC17.02■□□□□ 0.31
PRKDCP78527 AC080038.1-201ENST00000611274 1154 ntBASIC17.02■□□□□ 0.31
PRKDCP78527 GAMT-205ENST00000640762 751 ntTSL 5 BASIC17.02■□□□□ 0.31
PRKDCP78527 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PRKDCP78527 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC17.01■□□□□ 0.31
PRKDCP78527 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC17.01■□□□□ 0.31
PRKDCP78527 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
PRKDCP78527 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PRKDCP78527 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC17.01■□□□□ 0.31
PRKDCP78527 AC005703.6-201ENST00000623265 1329 ntBASIC17.01■□□□□ 0.31
PRKDCP78527 DET1-205ENST00000558413 583 ntTSL 4 BASIC17.01■□□□□ 0.31
PRKDCP78527 NTF6G-201ENST00000591094 616 ntBASIC17.01■□□□□ 0.31
PRKDCP78527 AC241377.3-202ENST00000626088 1088 ntBASIC17.01■□□□□ 0.31
PRKDCP78527 AC241585.3-202ENST00000628937 1088 ntBASIC17.01■□□□□ 0.31
PRKDCP78527 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC17.01■□□□□ 0.31
PRKDCP78527 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC17.01■□□□□ 0.31
PRKDCP78527 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC17.01■□□□□ 0.31
PRKDCP78527 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC17.01■□□□□ 0.31
PRKDCP78527 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
PRKDCP78527 GUSBP6-202ENST00000438529 1198 ntBASIC17■□□□□ 0.31
PRKDCP78527 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC17■□□□□ 0.31
PRKDCP78527 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC17■□□□□ 0.31
PRKDCP78527 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC17■□□□□ 0.31
PRKDCP78527 KRT18P6-201ENST00000555540 1265 ntBASIC17■□□□□ 0.31
PRKDCP78527 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC17■□□□□ 0.31
PRKDCP78527 AC009102.2-201ENST00000606772 1639 ntBASIC17■□□□□ 0.31
PRKDCP78527 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
PRKDCP78527 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC17■□□□□ 0.31
PRKDCP78527 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC17■□□□□ 0.31
PRKDCP78527 FOXO3B-201ENST00000395675 1928 ntBASIC16.99■□□□□ 0.31
PRKDCP78527 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PRKDCP78527 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC16.99■□□□□ 0.31
PRKDCP78527 BX842568.3-201ENST00000418104 571 ntBASIC16.99■□□□□ 0.31
PRKDCP78527 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC16.99■□□□□ 0.31
PRKDCP78527 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
PRKDCP78527 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC16.99■□□□□ 0.31
PRKDCP78527 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PRKDCP78527 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PRKDCP78527 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC16.98■□□□□ 0.31
PRKDCP78527 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC16.98■□□□□ 0.31
PRKDCP78527 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC16.98■□□□□ 0.31
PRKDCP78527 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PRKDCP78527 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC16.98■□□□□ 0.31
PRKDCP78527 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC16.98■□□□□ 0.31
PRKDCP78527 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC16.98■□□□□ 0.31
PRKDCP78527 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PRKDCP78527 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC16.98■□□□□ 0.31
PRKDCP78527 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC16.98■□□□□ 0.31
PRKDCP78527 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PRKDCP78527 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC16.97■□□□□ 0.31
PRKDCP78527 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PRKDCP78527 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC16.97■□□□□ 0.31
PRKDCP78527 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PRKDCP78527 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PRKDCP78527 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC16.97■□□□□ 0.31
PRKDCP78527 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PRKDCP78527 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PRKDCP78527 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC16.97■□□□□ 0.31
PRKDCP78527 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC16.97■□□□□ 0.31
PRKDCP78527 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
PRKDCP78527 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC16.97■□□□□ 0.31
PRKDCP78527 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC16.97■□□□□ 0.31
PRKDCP78527 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC16.97■□□□□ 0.31
PRKDCP78527 ARL16-209ENST00000573715 763 ntTSL 3 BASIC16.97■□□□□ 0.31
PRKDCP78527 ARL16-211ENST00000576135 694 ntTSL 3 BASIC16.97■□□□□ 0.31
PRKDCP78527 NCF1B-203ENST00000435988 1254 ntBASIC16.96■□□□□ 0.31
PRKDCP78527 PPP1R14BP3-201ENST00000509033 445 ntBASIC16.96■□□□□ 0.31
PRKDCP78527 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC16.96■□□□□ 0.31
PRKDCP78527 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PRKDCP78527 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PRKDCP78527 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC16.96■□□□□ 0.31
PRKDCP78527 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
PRKDCP78527 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
PRKDCP78527 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC16.95■□□□□ 0.3
PRKDCP78527 AL109923.1-201ENST00000618799 583 ntBASIC16.95■□□□□ 0.3
PRKDCP78527 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC16.95■□□□□ 0.3
PRKDCP78527 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PRKDCP78527 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PRKDCP78527 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
PRKDCP78527 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
PRKDCP78527 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC16.95■□□□□ 0.3
PRKDCP78527 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
PRKDCP78527 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PRKDCP78527 NME4-202ENST00000382940 766 ntTSL 3 BASIC16.94■□□□□ 0.3
PRKDCP78527 NME4-211ENST00000620944 1193 ntTSL 2 BASIC16.94■□□□□ 0.3
PRKDCP78527 PARP1-210ENST00000629232 477 ntTSL 5 BASIC16.94■□□□□ 0.3
PRKDCP78527 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
PRKDCP78527 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
PRKDCP78527 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
PRKDCP78527 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PRKDCP78527 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
PRKDCP78527 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PRKDCP78527 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC16.94■□□□□ 0.3
PRKDCP78527 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PRKDCP78527 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms