Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
RNF4P78317 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
RNF4P78317 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
RNF4P78317 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
RNF4P78317 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RNF4P78317 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
RNF4P78317 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RNF4P78317 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
RNF4P78317 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
RNF4P78317 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC21.31■■□□□ 1
RNF4P78317 LSM4-201ENST00000252816 986 ntTSL 2 BASIC21.31■■□□□ 1
RNF4P78317 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RNF4P78317 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RNF4P78317 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC21.31■■□□□ 1
RNF4P78317 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RNF4P78317 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC21.31■■□□□ 1
RNF4P78317 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RNF4P78317 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC21.31■■□□□ 1
RNF4P78317 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
RNF4P78317 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
RNF4P78317 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC21.31■■□□□ 1
RNF4P78317 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC21.31■■□□□ 1
RNF4P78317 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC21.3■■□□□ 1
RNF4P78317 AL161729.1-201ENST00000604104 1402 ntBASIC21.3■■□□□ 1
RNF4P78317 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RNF4P78317 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
RNF4P78317 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC21.3■■□□□ 1
RNF4P78317 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC21.3■■□□□ 1
RNF4P78317 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC21.3■■□□□ 1
RNF4P78317 AC131212.1-201ENST00000613771 668 ntBASIC21.3■■□□□ 1
RNF4P78317 MIR6724-1-201ENST00000616420 92 ntBASIC21.3■■□□□ 1
RNF4P78317 MIR6724-2-201ENST00000616483 92 ntBASIC21.3■■□□□ 1
RNF4P78317 MIR6724-4-201ENST00000617390 92 ntBASIC21.3■■□□□ 1
RNF4P78317 MIR6724-3-201ENST00000622482 92 ntBASIC21.3■■□□□ 1
RNF4P78317 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
RNF4P78317 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC21.3■■□□□ 1
RNF4P78317 CD37-213ENST00000598095 1598 ntTSL 2 BASIC21.3■■□□□ 1
RNF4P78317 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC21.3■■□□□ 1
RNF4P78317 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC21.3■■□□□ 1
RNF4P78317 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
RNF4P78317 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RNF4P78317 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
RNF4P78317 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RNF4P78317 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC21.29■■□□□ 1
RNF4P78317 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RNF4P78317 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RNF4P78317 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
RNF4P78317 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
RNF4P78317 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC21.29■■□□□ 1
RNF4P78317 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC21.29■■□□□ 1
RNF4P78317 CLTA-206ENST00000466396 695 ntTSL 2 BASIC21.29■■□□□ 1
RNF4P78317 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC21.29■■□□□ 1
RNF4P78317 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC21.29■■□□□ 1
RNF4P78317 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC21.28■■□□□ 1
RNF4P78317 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC21.28■■□□□ 1
RNF4P78317 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
RNF4P78317 CD72-202ENST00000378430 585 ntTSL 3 BASIC21.28■■□□□ 1
RNF4P78317 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC21.28■■□□□ 1
RNF4P78317 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC21.28■■□□□ 1
RNF4P78317 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC21.28■■□□□ 1
RNF4P78317 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC21.28■■□□□ 1
RNF4P78317 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
RNF4P78317 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC21.28■■□□□ 1
RNF4P78317 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC21.28■■□□□ 1
RNF4P78317 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC21.28■■□□□ 1
RNF4P78317 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC21.28■■□□□ 1
RNF4P78317 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
RNF4P78317 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC21.27■■□□□ 1
RNF4P78317 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC21.27■■□□□ 1
RNF4P78317 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
RNF4P78317 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC21.27■■□□□ 1
RNF4P78317 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC21.27■■□□□ 1
RNF4P78317 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RNF4P78317 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
RNF4P78317 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RNF4P78317 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RNF4P78317 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC21.26■□□□□ 0.99
RNF4P78317 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC21.26■□□□□ 0.99
RNF4P78317 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RNF4P78317 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RNF4P78317 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
RNF4P78317 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RNF4P78317 TFPT-201ENST00000391757 774 ntTSL 5 BASIC21.25■□□□□ 0.99
RNF4P78317 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
RNF4P78317 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RNF4P78317 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
RNF4P78317 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC21.25■□□□□ 0.99
RNF4P78317 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RNF4P78317 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC21.25■□□□□ 0.99
RNF4P78317 AL139125.2-201ENST00000623134 1869 ntBASIC21.24■□□□□ 0.99
RNF4P78317 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC21.24■□□□□ 0.99
RNF4P78317 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
RNF4P78317 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
RNF4P78317 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
RNF4P78317 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC21.23■□□□□ 0.99
RNF4P78317 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
RNF4P78317 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RNF4P78317 REST-206ENST00000612429 1376 ntTSL 5 BASIC21.23■□□□□ 0.99
RNF4P78317 REST-207ENST00000616975 1370 ntTSL 5 BASIC21.23■□□□□ 0.99
RNF4P78317 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms