Protein–RNA interactions for Protein: P49642

PRIM1, DNA primase small subunit, humanhuman

Known RBP Predictions only

Length 420 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRIM1P49642 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
PRIM1P49642 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC30.15■■■□□ 2.42
PRIM1P49642 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
PRIM1P49642 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC30.14■■■□□ 2.42
PRIM1P49642 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC30.14■■■□□ 2.42
PRIM1P49642 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
PRIM1P49642 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC30.14■■■□□ 2.42
PRIM1P49642 JTB-203ENST00000368589 1216 ntTSL 2 BASIC30.14■■■□□ 2.42
PRIM1P49642 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
PRIM1P49642 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC30.14■■■□□ 2.42
PRIM1P49642 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
PRIM1P49642 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
PRIM1P49642 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
PRIM1P49642 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC30.13■■■□□ 2.41
PRIM1P49642 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC30.13■■■□□ 2.41
PRIM1P49642 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
PRIM1P49642 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
PRIM1P49642 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC30.13■■■□□ 2.41
PRIM1P49642 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC30.12■■■□□ 2.41
PRIM1P49642 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
PRIM1P49642 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC30.12■■■□□ 2.41
PRIM1P49642 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC30.12■■■□□ 2.41
PRIM1P49642 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
PRIM1P49642 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
PRIM1P49642 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC30.12■■■□□ 2.41
PRIM1P49642 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
PRIM1P49642 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC30.11■■■□□ 2.41
PRIM1P49642 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
PRIM1P49642 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC30.11■■■□□ 2.41
PRIM1P49642 AC099791.1-201ENST00000416440 715 ntBASIC30.11■■■□□ 2.41
PRIM1P49642 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC30.11■■■□□ 2.41
PRIM1P49642 RHOF-204ENST00000537265 699 ntTSL 2 BASIC30.11■■■□□ 2.41
PRIM1P49642 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
PRIM1P49642 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC30.11■■■□□ 2.41
PRIM1P49642 AC011298.3-201ENST00000615796 283 ntBASIC30.11■■■□□ 2.41
PRIM1P49642 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC30.11■■■□□ 2.41
PRIM1P49642 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC30.11■■■□□ 2.41
PRIM1P49642 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
PRIM1P49642 AL121749.1-202ENST00000609313 2153 ntBASIC30.1■■■□□ 2.41
PRIM1P49642 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC30.1■■■□□ 2.41
PRIM1P49642 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC30.1■■■□□ 2.41
PRIM1P49642 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
PRIM1P49642 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
PRIM1P49642 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC30.09■■■□□ 2.41
PRIM1P49642 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
PRIM1P49642 AL138724.1-201ENST00000606771 1088 ntBASIC30.08■■■□□ 2.41
PRIM1P49642 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
PRIM1P49642 AC131274.2-201ENST00000580697 1507 ntBASIC30.07■■■□□ 2.4
PRIM1P49642 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
PRIM1P49642 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC30.07■■■□□ 2.4
PRIM1P49642 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
PRIM1P49642 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC30.07■■■□□ 2.4
PRIM1P49642 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC30.07■■■□□ 2.4
PRIM1P49642 AC009102.2-201ENST00000606772 1639 ntBASIC30.07■■■□□ 2.4
PRIM1P49642 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
PRIM1P49642 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC30.06■■■□□ 2.4
PRIM1P49642 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
PRIM1P49642 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
PRIM1P49642 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC30.06■■■□□ 2.4
PRIM1P49642 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC30.06■■■□□ 2.4
PRIM1P49642 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
PRIM1P49642 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
PRIM1P49642 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC30.05■■■□□ 2.4
PRIM1P49642 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
PRIM1P49642 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC30.05■■■□□ 2.4
PRIM1P49642 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC30.05■■■□□ 2.4
PRIM1P49642 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
PRIM1P49642 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC30.04■■■□□ 2.4
PRIM1P49642 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC30.04■■■□□ 2.4
PRIM1P49642 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
PRIM1P49642 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
PRIM1P49642 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC30.04■■■□□ 2.4
PRIM1P49642 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
PRIM1P49642 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
PRIM1P49642 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC30.04■■■□□ 2.4
PRIM1P49642 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
PRIM1P49642 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC30.03■■■□□ 2.4
PRIM1P49642 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC30.02■■■□□ 2.4
PRIM1P49642 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
PRIM1P49642 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
PRIM1P49642 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
PRIM1P49642 HES6-206ENST00000409574 738 ntTSL 2 BASIC30.02■■■□□ 2.4
PRIM1P49642 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC30.02■■■□□ 2.4
PRIM1P49642 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC30.02■■■□□ 2.4
PRIM1P49642 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
PRIM1P49642 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC30.01■■■□□ 2.39
PRIM1P49642 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC30.01■■■□□ 2.39
PRIM1P49642 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC30.01■■■□□ 2.39
PRIM1P49642 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
PRIM1P49642 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC30■■■□□ 2.39
PRIM1P49642 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC30■■■□□ 2.39
PRIM1P49642 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC30■■■□□ 2.39
PRIM1P49642 SP2-202ENST00000613139 908 ntTSL 5 BASIC30■■■□□ 2.39
PRIM1P49642 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
PRIM1P49642 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC30■■■□□ 2.39
PRIM1P49642 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC30■■■□□ 2.39
PRIM1P49642 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
PRIM1P49642 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC29.99■■■□□ 2.39
PRIM1P49642 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC29.99■■■□□ 2.39
PRIM1P49642 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC29.99■■■□□ 2.39
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms