Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
HTTP42858 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC26.33■■□□□ 1.81
HTTP42858 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
HTTP42858 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
HTTP42858 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC26.33■■□□□ 1.81
HTTP42858 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC26.33■■□□□ 1.8
HTTP42858 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
HTTP42858 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC26.32■■□□□ 1.8
HTTP42858 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC26.32■■□□□ 1.8
HTTP42858 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC26.32■■□□□ 1.8
HTTP42858 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
HTTP42858 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC26.32■■□□□ 1.8
HTTP42858 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC26.32■■□□□ 1.8
HTTP42858 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC26.31■■□□□ 1.8
HTTP42858 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC26.31■■□□□ 1.8
HTTP42858 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
HTTP42858 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC26.31■■□□□ 1.8
HTTP42858 AC123595.1-201ENST00000440769 1046 ntBASIC26.31■■□□□ 1.8
HTTP42858 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC26.31■■□□□ 1.8
HTTP42858 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
HTTP42858 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC26.31■■□□□ 1.8
HTTP42858 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
HTTP42858 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
HTTP42858 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
HTTP42858 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
HTTP42858 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
HTTP42858 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC26.3■■□□□ 1.8
HTTP42858 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC26.3■■□□□ 1.8
HTTP42858 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
HTTP42858 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC26.3■■□□□ 1.8
HTTP42858 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC26.3■■□□□ 1.8
HTTP42858 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC26.3■■□□□ 1.8
HTTP42858 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
HTTP42858 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC26.29■■□□□ 1.8
HTTP42858 LBH-205ENST00000407930 756 ntTSL 2 BASIC26.29■■□□□ 1.8
HTTP42858 MPST-208ENST00000628507 698 ntTSL 5 BASIC26.29■■□□□ 1.8
HTTP42858 AC009102.2-201ENST00000606772 1639 ntBASIC26.29■■□□□ 1.8
HTTP42858 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
HTTP42858 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
HTTP42858 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC26.29■■□□□ 1.8
HTTP42858 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
HTTP42858 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
HTTP42858 AC006455.2-201ENST00000429931 906 ntBASIC26.28■■□□□ 1.8
HTTP42858 TK2-208ENST00000545043 1120 ntTSL 2 BASIC26.28■■□□□ 1.8
HTTP42858 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC26.28■■□□□ 1.8
HTTP42858 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC26.28■■□□□ 1.8
HTTP42858 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
HTTP42858 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
HTTP42858 AC096887.2-201ENST00000623443 1957 ntBASIC26.28■■□□□ 1.8
HTTP42858 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC26.28■■□□□ 1.8
HTTP42858 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
HTTP42858 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC26.27■■□□□ 1.8
HTTP42858 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
HTTP42858 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC26.26■■□□□ 1.79
HTTP42858 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC26.26■■□□□ 1.79
HTTP42858 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC26.26■■□□□ 1.79
HTTP42858 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC26.26■■□□□ 1.79
HTTP42858 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC26.26■■□□□ 1.79
HTTP42858 TERF1P2-201ENST00000583350 1212 ntBASIC26.25■■□□□ 1.79
HTTP42858 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC26.25■■□□□ 1.79
HTTP42858 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC26.25■■□□□ 1.79
HTTP42858 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
HTTP42858 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
HTTP42858 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
HTTP42858 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC26.23■■□□□ 1.79
HTTP42858 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC26.23■■□□□ 1.79
HTTP42858 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
HTTP42858 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC26.23■■□□□ 1.79
HTTP42858 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC26.23■■□□□ 1.79
HTTP42858 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
HTTP42858 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC26.23■■□□□ 1.79
HTTP42858 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC26.23■■□□□ 1.79
HTTP42858 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
HTTP42858 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC26.22■■□□□ 1.79
HTTP42858 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
HTTP42858 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC26.22■■□□□ 1.79
HTTP42858 AL358852.1-201ENST00000623174 1268 ntBASIC26.22■■□□□ 1.79
HTTP42858 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
HTTP42858 ST7-205ENST00000393446 2114 ntTSL 5 BASIC26.22■■□□□ 1.79
HTTP42858 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
HTTP42858 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
HTTP42858 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
HTTP42858 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
HTTP42858 GRAMD4P2-201ENST00000423297 1097 ntBASIC26.21■■□□□ 1.79
HTTP42858 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC26.21■■□□□ 1.79
HTTP42858 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
HTTP42858 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
HTTP42858 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC26.21■■□□□ 1.79
HTTP42858 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC26.21■■□□□ 1.79
HTTP42858 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC26.21■■□□□ 1.79
HTTP42858 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC26.21■■□□□ 1.79
HTTP42858 AC066615.1-201ENST00000640911 628 ntBASIC26.21■■□□□ 1.79
HTTP42858 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC26.21■■□□□ 1.79
HTTP42858 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC26.21■■□□□ 1.79
HTTP42858 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
HTTP42858 SNX3-202ENST00000349379 890 ntTSL 2 BASIC26.21■■□□□ 1.79
HTTP42858 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC26.21■■□□□ 1.79
HTTP42858 CCDC92B-201ENST00000575506 885 ntBASIC26.21■■□□□ 1.79
HTTP42858 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
HTTP42858 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 10.3 ms