Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC28.13■■■□□ 2.09
COL4A5P29400 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
COL4A5P29400 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC28.13■■■□□ 2.09
COL4A5P29400 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
COL4A5P29400 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC28.13■■■□□ 2.09
COL4A5P29400 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
COL4A5P29400 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC28.13■■■□□ 2.09
COL4A5P29400 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
COL4A5P29400 AC009102.2-201ENST00000606772 1639 ntBASIC28.13■■■□□ 2.09
COL4A5P29400 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC28.13■■■□□ 2.09
COL4A5P29400 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
COL4A5P29400 AC092171.4-201ENST00000609130 632 ntBASIC28.13■■■□□ 2.09
COL4A5P29400 AC092437.1-201ENST00000624794 1048 ntBASIC28.13■■■□□ 2.09
COL4A5P29400 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC28.12■■■□□ 2.09
COL4A5P29400 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC28.12■■■□□ 2.09
COL4A5P29400 AL138724.1-201ENST00000606771 1088 ntBASIC28.12■■■□□ 2.09
COL4A5P29400 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC28.12■■■□□ 2.09
COL4A5P29400 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
COL4A5P29400 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
COL4A5P29400 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC28.11■■■□□ 2.09
COL4A5P29400 AC136469.2-201ENST00000623944 1028 ntBASIC28.11■■■□□ 2.09
COL4A5P29400 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC28.11■■■□□ 2.09
COL4A5P29400 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC28.11■■■□□ 2.09
COL4A5P29400 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
COL4A5P29400 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC28.11■■■□□ 2.09
COL4A5P29400 REST-206ENST00000612429 1376 ntTSL 5 BASIC28.11■■■□□ 2.09
COL4A5P29400 REST-207ENST00000616975 1370 ntTSL 5 BASIC28.11■■■□□ 2.09
COL4A5P29400 C17orf82-201ENST00000623772 1530 ntBASIC28.1■■■□□ 2.09
COL4A5P29400 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC28.1■■■□□ 2.09
COL4A5P29400 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC28.1■■■□□ 2.09
COL4A5P29400 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
COL4A5P29400 KRT18P5-201ENST00000436075 1291 ntBASIC28.1■■■□□ 2.09
COL4A5P29400 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC28.1■■■□□ 2.09
COL4A5P29400 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
COL4A5P29400 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC28.1■■■□□ 2.09
COL4A5P29400 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC28.09■■■□□ 2.09
COL4A5P29400 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC28.09■■■□□ 2.09
COL4A5P29400 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC28.09■■■□□ 2.09
COL4A5P29400 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC28.09■■■□□ 2.09
COL4A5P29400 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC28.09■■■□□ 2.09
COL4A5P29400 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC28.08■■■□□ 2.09
COL4A5P29400 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
COL4A5P29400 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
COL4A5P29400 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC28.07■■■□□ 2.08
COL4A5P29400 ASB1-202ENST00000409297 878 ntTSL 5 BASIC28.07■■■□□ 2.08
COL4A5P29400 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC28.07■■■□□ 2.08
COL4A5P29400 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
COL4A5P29400 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC28.07■■■□□ 2.08
COL4A5P29400 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC28.07■■■□□ 2.08
COL4A5P29400 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC28.06■■■□□ 2.08
COL4A5P29400 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC28.06■■■□□ 2.08
COL4A5P29400 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
COL4A5P29400 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC28.06■■■□□ 2.08
COL4A5P29400 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC28.06■■■□□ 2.08
COL4A5P29400 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC28.06■■■□□ 2.08
COL4A5P29400 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
COL4A5P29400 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
COL4A5P29400 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
COL4A5P29400 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
COL4A5P29400 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
COL4A5P29400 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
COL4A5P29400 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC28.04■■■□□ 2.08
COL4A5P29400 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
COL4A5P29400 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC28.04■■■□□ 2.08
COL4A5P29400 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC28.04■■■□□ 2.08
COL4A5P29400 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC28.04■■■□□ 2.08
COL4A5P29400 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC28.04■■■□□ 2.08
COL4A5P29400 AC010501.1-201ENST00000606270 1962 ntBASIC28.04■■■□□ 2.08
COL4A5P29400 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC28.04■■■□□ 2.08
COL4A5P29400 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
COL4A5P29400 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
COL4A5P29400 HES6-206ENST00000409574 738 ntTSL 2 BASIC28.03■■■□□ 2.08
COL4A5P29400 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC28.03■■■□□ 2.08
COL4A5P29400 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC28.03■■■□□ 2.08
COL4A5P29400 AC022517.1-201ENST00000592429 346 ntBASIC28.03■■■□□ 2.08
COL4A5P29400 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC28.03■■■□□ 2.08
COL4A5P29400 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC28.03■■■□□ 2.08
COL4A5P29400 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
COL4A5P29400 SNX3-202ENST00000349379 890 ntTSL 2 BASIC28.03■■■□□ 2.08
COL4A5P29400 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC28.03■■■□□ 2.08
COL4A5P29400 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC28.03■■■□□ 2.08
COL4A5P29400 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC28.03■■■□□ 2.08
COL4A5P29400 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
COL4A5P29400 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
COL4A5P29400 AC034268.1-201ENST00000441047 882 ntBASIC28.02■■■□□ 2.08
COL4A5P29400 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC28.02■■■□□ 2.08
COL4A5P29400 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC28.02■■■□□ 2.08
COL4A5P29400 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC28.01■■■□□ 2.07
COL4A5P29400 DUX4L2-201ENST00000561772 1275 ntBASIC28.01■■■□□ 2.07
COL4A5P29400 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC28.01■■■□□ 2.07
COL4A5P29400 DUX4L6-201ENST00000626483 1275 ntBASIC28.01■■■□□ 2.07
COL4A5P29400 DUX4L1-201ENST00000627662 1275 ntBASIC28.01■■■□□ 2.07
COL4A5P29400 DUX4L8-201ENST00000629013 1275 ntBASIC28.01■■■□□ 2.07
COL4A5P29400 DUX4L3-201ENST00000630187 1275 ntBASIC28.01■■■□□ 2.07
COL4A5P29400 DUX4L7-201ENST00000630678 1275 ntBASIC28.01■■■□□ 2.07
COL4A5P29400 DUX4L5-201ENST00000630834 1275 ntBASIC28.01■■■□□ 2.07
COL4A5P29400 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC28.01■■■□□ 2.07
COL4A5P29400 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC28.01■■■□□ 2.07
COL4A5P29400 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
COL4A5P29400 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms