Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
COL8A1P27658 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC20.19■□□□□ 0.82
COL8A1P27658 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL8A1P27658 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL8A1P27658 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL8A1P27658 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL8A1P27658 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL8A1P27658 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL8A1P27658 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
COL8A1P27658 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC20.18■□□□□ 0.82
COL8A1P27658 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.18■□□□□ 0.82
COL8A1P27658 RAB43-208ENST00000615093 783 ntTSL 5 BASIC20.18■□□□□ 0.82
COL8A1P27658 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC20.18■□□□□ 0.82
COL8A1P27658 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC20.17■□□□□ 0.82
COL8A1P27658 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC20.17■□□□□ 0.82
COL8A1P27658 AC233992.3-201ENST00000607491 485 ntBASIC20.17■□□□□ 0.82
COL8A1P27658 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
COL8A1P27658 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL8A1P27658 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL8A1P27658 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL8A1P27658 ABHD17AP1-201ENST00000358206 933 ntBASIC20.16■□□□□ 0.82
COL8A1P27658 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL8A1P27658 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL8A1P27658 HES6-206ENST00000409574 738 ntTSL 2 BASIC20.16■□□□□ 0.82
COL8A1P27658 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC20.16■□□□□ 0.82
COL8A1P27658 AL138724.1-201ENST00000606771 1088 ntBASIC20.16■□□□□ 0.82
COL8A1P27658 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL8A1P27658 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL8A1P27658 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL8A1P27658 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL8A1P27658 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC20.16■□□□□ 0.82
COL8A1P27658 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
COL8A1P27658 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC20.15■□□□□ 0.82
COL8A1P27658 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
COL8A1P27658 AC245100.8-202ENST00000629247 1058 ntBASIC20.15■□□□□ 0.82
COL8A1P27658 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL8A1P27658 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL8A1P27658 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL8A1P27658 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
COL8A1P27658 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL8A1P27658 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
COL8A1P27658 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC20.14■□□□□ 0.81
COL8A1P27658 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC20.14■□□□□ 0.81
COL8A1P27658 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC20.14■□□□□ 0.81
COL8A1P27658 NME4-202ENST00000382940 766 ntTSL 3 BASIC20.14■□□□□ 0.81
COL8A1P27658 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC20.14■□□□□ 0.81
COL8A1P27658 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC20.14■□□□□ 0.81
COL8A1P27658 NME4-211ENST00000620944 1193 ntTSL 2 BASIC20.14■□□□□ 0.81
COL8A1P27658 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL8A1P27658 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL8A1P27658 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC20.13■□□□□ 0.81
COL8A1P27658 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC20.13■□□□□ 0.81
COL8A1P27658 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
COL8A1P27658 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC20.13■□□□□ 0.81
COL8A1P27658 MPST-208ENST00000628507 698 ntTSL 5 BASIC20.13■□□□□ 0.81
COL8A1P27658 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC20.13■□□□□ 0.81
COL8A1P27658 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL8A1P27658 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
COL8A1P27658 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC20.13■□□□□ 0.81
COL8A1P27658 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL8A1P27658 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
COL8A1P27658 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
COL8A1P27658 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
COL8A1P27658 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
COL8A1P27658 TK2-208ENST00000545043 1120 ntTSL 2 BASIC20.12■□□□□ 0.81
COL8A1P27658 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC20.12■□□□□ 0.81
COL8A1P27658 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC20.12■□□□□ 0.81
COL8A1P27658 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC20.12■□□□□ 0.81
COL8A1P27658 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
COL8A1P27658 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC20.12■□□□□ 0.81
COL8A1P27658 AP004609.3-201ENST00000610705 1884 ntBASIC20.11■□□□□ 0.81
COL8A1P27658 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
COL8A1P27658 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC20.11■□□□□ 0.81
COL8A1P27658 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL8A1P27658 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
COL8A1P27658 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC20.11■□□□□ 0.81
COL8A1P27658 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC20.11■□□□□ 0.81
COL8A1P27658 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC20.11■□□□□ 0.81
COL8A1P27658 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
COL8A1P27658 AC136469.2-201ENST00000623944 1028 ntBASIC20.11■□□□□ 0.81
COL8A1P27658 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC20.11■□□□□ 0.81
COL8A1P27658 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL8A1P27658 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL8A1P27658 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL8A1P27658 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL8A1P27658 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL8A1P27658 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
COL8A1P27658 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL8A1P27658 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
COL8A1P27658 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC20.1■□□□□ 0.81
COL8A1P27658 BX842568.3-201ENST00000418104 571 ntBASIC20.1■□□□□ 0.81
COL8A1P27658 GXYLT1P5-201ENST00000614548 1189 ntBASIC20.1■□□□□ 0.81
COL8A1P27658 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL8A1P27658 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL8A1P27658 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
COL8A1P27658 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL8A1P27658 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL8A1P27658 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL8A1P27658 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL8A1P27658 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms