Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC30.83■■■□□ 2.53
COL3A1P02461 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
COL3A1P02461 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.53
COL3A1P02461 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC30.82■■■□□ 2.52
COL3A1P02461 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC30.82■■■□□ 2.52
COL3A1P02461 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC30.82■■■□□ 2.52
COL3A1P02461 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC30.82■■■□□ 2.52
COL3A1P02461 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
COL3A1P02461 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC30.82■■■□□ 2.52
COL3A1P02461 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
COL3A1P02461 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC30.81■■■□□ 2.52
COL3A1P02461 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC30.81■■■□□ 2.52
COL3A1P02461 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
COL3A1P02461 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
COL3A1P02461 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC30.8■■■□□ 2.52
COL3A1P02461 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
COL3A1P02461 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC30.8■■■□□ 2.52
COL3A1P02461 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC30.8■■■□□ 2.52
COL3A1P02461 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC30.8■■■□□ 2.52
COL3A1P02461 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
COL3A1P02461 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
COL3A1P02461 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC30.79■■■□□ 2.52
COL3A1P02461 TRIR-202ENST00000588213 841 ntTSL 3 BASIC30.79■■■□□ 2.52
COL3A1P02461 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
COL3A1P02461 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC30.78■■■□□ 2.52
COL3A1P02461 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
COL3A1P02461 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC30.78■■■□□ 2.52
COL3A1P02461 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC30.78■■■□□ 2.52
COL3A1P02461 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
COL3A1P02461 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC30.77■■■□□ 2.52
COL3A1P02461 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC30.77■■■□□ 2.52
COL3A1P02461 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
COL3A1P02461 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC30.76■■■□□ 2.52
COL3A1P02461 STK32C-205ENST00000456004 607 ntTSL 2 BASIC30.76■■■□□ 2.52
COL3A1P02461 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC30.76■■■□□ 2.52
COL3A1P02461 EED-207ENST00000528180 1745 ntTSL 5 BASIC30.76■■■□□ 2.51
COL3A1P02461 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC30.76■■■□□ 2.51
COL3A1P02461 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC30.76■■■□□ 2.51
COL3A1P02461 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC30.76■■■□□ 2.51
COL3A1P02461 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
COL3A1P02461 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC30.75■■■□□ 2.51
COL3A1P02461 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC30.75■■■□□ 2.51
COL3A1P02461 MIR4466-201ENST00000606121 54 ntBASIC30.75■■■□□ 2.51
COL3A1P02461 AL022069.1-201ENST00000568025 1636 ntBASIC30.74■■■□□ 2.51
COL3A1P02461 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
COL3A1P02461 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
COL3A1P02461 RPP21-222ENST00000433076 577 ntTSL 2 BASIC30.74■■■□□ 2.51
COL3A1P02461 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC30.74■■■□□ 2.51
COL3A1P02461 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC30.74■■■□□ 2.51
COL3A1P02461 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
COL3A1P02461 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
COL3A1P02461 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
COL3A1P02461 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC30.72■■■□□ 2.51
COL3A1P02461 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC30.72■■■□□ 2.51
COL3A1P02461 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC30.71■■■□□ 2.51
COL3A1P02461 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC30.71■■■□□ 2.51
COL3A1P02461 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
COL3A1P02461 TMEM202-AS1-202ENST00000565181 2325 ntBASIC30.71■■■□□ 2.51
COL3A1P02461 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
COL3A1P02461 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC30.71■■■□□ 2.51
COL3A1P02461 AL161729.1-201ENST00000604104 1402 ntBASIC30.7■■■□□ 2.51
COL3A1P02461 SRR-208ENST00000576848 588 ntTSL 4 BASIC30.7■■■□□ 2.51
COL3A1P02461 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC30.7■■■□□ 2.51
COL3A1P02461 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
COL3A1P02461 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC30.7■■■□□ 2.51
COL3A1P02461 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.5
COL3A1P02461 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC30.7■■■□□ 2.5
COL3A1P02461 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.5
COL3A1P02461 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC30.69■■■□□ 2.5
COL3A1P02461 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC30.69■■■□□ 2.5
COL3A1P02461 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
COL3A1P02461 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC30.69■■■□□ 2.5
COL3A1P02461 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
COL3A1P02461 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC30.69■■■□□ 2.5
COL3A1P02461 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC30.69■■■□□ 2.5
COL3A1P02461 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC30.69■■■□□ 2.5
COL3A1P02461 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
COL3A1P02461 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
COL3A1P02461 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
COL3A1P02461 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
COL3A1P02461 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC30.68■■■□□ 2.5
COL3A1P02461 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC30.67■■■□□ 2.5
COL3A1P02461 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC30.67■■■□□ 2.5
COL3A1P02461 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC30.67■■■□□ 2.5
COL3A1P02461 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC30.67■■■□□ 2.5
COL3A1P02461 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC30.67■■■□□ 2.5
COL3A1P02461 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC30.66■■■□□ 2.5
COL3A1P02461 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC30.66■■■□□ 2.5
COL3A1P02461 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
COL3A1P02461 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC30.66■■■□□ 2.5
COL3A1P02461 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
COL3A1P02461 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
COL3A1P02461 AK3-203ENST00000447596 705 ntTSL 2 BASIC30.66■■■□□ 2.5
COL3A1P02461 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC30.66■■■□□ 2.5
COL3A1P02461 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC30.66■■■□□ 2.5
COL3A1P02461 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC30.66■■■□□ 2.5
COL3A1P02461 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
COL3A1P02461 AC135731.1-201ENST00000569415 2548 ntBASIC30.66■■■□□ 2.5
COL3A1P02461 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
COL3A1P02461 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms