Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CACNA1AO00555 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CACNA1AO00555 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CACNA1AO00555 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC22.25■■□□□ 1.15
CACNA1AO00555 AC012414.1-201ENST00000556676 535 ntBASIC22.25■■□□□ 1.15
CACNA1AO00555 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC22.25■■□□□ 1.15
CACNA1AO00555 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC22.25■■□□□ 1.15
CACNA1AO00555 NT5C3AP1-201ENST00000394500 1012 ntBASIC22.25■■□□□ 1.15
CACNA1AO00555 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC22.25■■□□□ 1.15
CACNA1AO00555 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC22.24■■□□□ 1.15
CACNA1AO00555 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC22.24■■□□□ 1.15
CACNA1AO00555 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CACNA1AO00555 AC016769.1-201ENST00000409132 1010 ntBASIC22.24■■□□□ 1.15
CACNA1AO00555 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
CACNA1AO00555 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC22.24■■□□□ 1.15
CACNA1AO00555 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC22.24■■□□□ 1.15
CACNA1AO00555 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC22.24■■□□□ 1.15
CACNA1AO00555 AC245100.8-202ENST00000629247 1058 ntBASIC22.24■■□□□ 1.15
CACNA1AO00555 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC22.24■■□□□ 1.15
CACNA1AO00555 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC22.24■■□□□ 1.15
CACNA1AO00555 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
CACNA1AO00555 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CACNA1AO00555 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CACNA1AO00555 WT1-AS_3.1-201ENST00000613262 234 ntBASIC22.24■■□□□ 1.15
CACNA1AO00555 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC22.24■■□□□ 1.15
CACNA1AO00555 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC22.24■■□□□ 1.15
CACNA1AO00555 ST7-AS1-201ENST00000456775 1889 ntBASIC22.24■■□□□ 1.15
CACNA1AO00555 MIR663A-201ENST00000385250 93 ntBASIC22.23■■□□□ 1.15
CACNA1AO00555 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
CACNA1AO00555 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
CACNA1AO00555 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CACNA1AO00555 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
CACNA1AO00555 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC22.23■■□□□ 1.15
CACNA1AO00555 C17orf82-201ENST00000623772 1530 ntBASIC22.22■■□□□ 1.15
CACNA1AO00555 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC22.22■■□□□ 1.15
CACNA1AO00555 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
CACNA1AO00555 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC22.22■■□□□ 1.15
CACNA1AO00555 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC22.22■■□□□ 1.15
CACNA1AO00555 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
CACNA1AO00555 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
CACNA1AO00555 APTR-205ENST00000447009 902 ntTSL 2 BASIC22.22■■□□□ 1.15
CACNA1AO00555 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC22.22■■□□□ 1.15
CACNA1AO00555 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC22.21■■□□□ 1.15
CACNA1AO00555 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CACNA1AO00555 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC22.21■■□□□ 1.15
CACNA1AO00555 MIR6084-201ENST00000622012 110 ntBASIC22.21■■□□□ 1.15
CACNA1AO00555 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CACNA1AO00555 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC22.21■■□□□ 1.15
CACNA1AO00555 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC22.21■■□□□ 1.15
CACNA1AO00555 AC137761.2-201ENST00000561729 223 ntBASIC22.2■■□□□ 1.14
CACNA1AO00555 AC145350.3-201ENST00000569033 163 ntBASIC22.2■■□□□ 1.14
CACNA1AO00555 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC22.2■■□□□ 1.14
CACNA1AO00555 BX255925.1-201ENST00000566954 1854 ntBASIC22.2■■□□□ 1.14
CACNA1AO00555 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CACNA1AO00555 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC22.2■■□□□ 1.14
CACNA1AO00555 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC22.2■■□□□ 1.14
CACNA1AO00555 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
CACNA1AO00555 AICDA-202ENST00000537228 667 ntTSL 5 BASIC22.19■■□□□ 1.14
CACNA1AO00555 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CACNA1AO00555 STX7-201ENST00000367937 1090 ntTSL 5 BASIC22.19■■□□□ 1.14
CACNA1AO00555 MIR1224-201ENST00000408193 85 ntBASIC22.19■■□□□ 1.14
CACNA1AO00555 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
CACNA1AO00555 AL354811.1-201ENST00000610286 706 ntBASIC22.19■■□□□ 1.14
CACNA1AO00555 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
CACNA1AO00555 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC22.18■■□□□ 1.14
CACNA1AO00555 AC087239.1-201ENST00000622671 572 ntBASIC22.18■■□□□ 1.14
CACNA1AO00555 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CACNA1AO00555 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CACNA1AO00555 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CACNA1AO00555 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC22.17■■□□□ 1.14
CACNA1AO00555 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC22.17■■□□□ 1.14
CACNA1AO00555 MIR572-201ENST00000384983 95 ntBASIC22.17■■□□□ 1.14
CACNA1AO00555 GPX1P1-201ENST00000388829 606 ntBASIC22.17■■□□□ 1.14
CACNA1AO00555 AC006455.2-201ENST00000429931 906 ntBASIC22.17■■□□□ 1.14
CACNA1AO00555 KLF13-207ENST00000560473 489 ntTSL 3 BASIC22.17■■□□□ 1.14
CACNA1AO00555 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC22.17■■□□□ 1.14
CACNA1AO00555 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CACNA1AO00555 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC22.17■■□□□ 1.14
CACNA1AO00555 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CACNA1AO00555 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC22.16■■□□□ 1.14
CACNA1AO00555 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC22.16■■□□□ 1.14
CACNA1AO00555 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CACNA1AO00555 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC22.16■■□□□ 1.14
CACNA1AO00555 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CACNA1AO00555 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC22.16■■□□□ 1.14
CACNA1AO00555 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC22.16■■□□□ 1.14
CACNA1AO00555 AL139393.2-201ENST00000608721 2025 ntBASIC22.16■■□□□ 1.14
CACNA1AO00555 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CACNA1AO00555 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC22.16■■□□□ 1.14
CACNA1AO00555 MIR3181-201ENST00000578512 73 ntBASIC22.16■■□□□ 1.14
CACNA1AO00555 PRORSD1P-201ENST00000295112 541 ntBASIC22.15■■□□□ 1.14
CACNA1AO00555 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC22.15■■□□□ 1.14
CACNA1AO00555 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC22.15■■□□□ 1.14
CACNA1AO00555 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
CACNA1AO00555 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC22.15■■□□□ 1.14
CACNA1AO00555 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CACNA1AO00555 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC22.15■■□□□ 1.14
CACNA1AO00555 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CACNA1AO00555 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC22.15■■□□□ 1.14
CACNA1AO00555 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 79.9 ms