Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
ATG4BQ9Y4P1 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC14.33□□□□□ -0.11
ATG4BQ9Y4P1 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.11
ATG4BQ9Y4P1 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
ATG4BQ9Y4P1 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.11
ATG4BQ9Y4P1 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
ATG4BQ9Y4P1 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC14.33□□□□□ -0.11
ATG4BQ9Y4P1 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
ATG4BQ9Y4P1 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
ATG4BQ9Y4P1 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
ATG4BQ9Y4P1 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC14.33□□□□□ -0.12
ATG4BQ9Y4P1 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
ATG4BQ9Y4P1 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC14.33□□□□□ -0.12
ATG4BQ9Y4P1 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
ATG4BQ9Y4P1 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC14.33□□□□□ -0.12
ATG4BQ9Y4P1 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC14.33□□□□□ -0.12
ATG4BQ9Y4P1 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
ATG4BQ9Y4P1 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
ATG4BQ9Y4P1 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
ATG4BQ9Y4P1 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
ATG4BQ9Y4P1 AC055811.4-201ENST00000624039 1754 ntBASIC14.33□□□□□ -0.12
ATG4BQ9Y4P1 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
ATG4BQ9Y4P1 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
ATG4BQ9Y4P1 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
ATG4BQ9Y4P1 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
ATG4BQ9Y4P1 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
ATG4BQ9Y4P1 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
ATG4BQ9Y4P1 ACTBP8-201ENST00000403258 1108 ntBASIC14.33□□□□□ -0.12
ATG4BQ9Y4P1 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
ATG4BQ9Y4P1 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC14.33□□□□□ -0.12
ATG4BQ9Y4P1 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC14.33□□□□□ -0.12
ATG4BQ9Y4P1 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
ATG4BQ9Y4P1 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC14.33□□□□□ -0.12
ATG4BQ9Y4P1 KRT18P25-201ENST00000508931 1278 ntBASIC14.33□□□□□ -0.12
ATG4BQ9Y4P1 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC14.33□□□□□ -0.12
ATG4BQ9Y4P1 TDH-203ENST00000531764 1110 ntBASIC14.33□□□□□ -0.12
ATG4BQ9Y4P1 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
ATG4BQ9Y4P1 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
ATG4BQ9Y4P1 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
ATG4BQ9Y4P1 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
ATG4BQ9Y4P1 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC14.33□□□□□ -0.12
ATG4BQ9Y4P1 KRT8P35-201ENST00000483942 1338 ntBASIC14.33□□□□□ -0.12
ATG4BQ9Y4P1 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC14.33□□□□□ -0.12
ATG4BQ9Y4P1 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC14.33□□□□□ -0.12
ATG4BQ9Y4P1 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
ATG4BQ9Y4P1 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC14.33□□□□□ -0.12
ATG4BQ9Y4P1 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
ATG4BQ9Y4P1 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
ATG4BQ9Y4P1 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
ATG4BQ9Y4P1 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
ATG4BQ9Y4P1 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
ATG4BQ9Y4P1 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
ATG4BQ9Y4P1 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 MGST3-203ENST00000367885 680 ntTSL 2 BASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 AL512384.1-201ENST00000406683 331 ntBASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 BAATP1-201ENST00000412284 1225 ntBASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 AC012441.1-201ENST00000446669 685 ntBASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 GIMAP3P-201ENST00000495150 836 ntBASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 AC026434.2-201ENST00000506094 1078 ntBASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 PTP4A1P2-201ENST00000546033 454 ntBASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 RPS15-202ENST00000585665 467 ntTSL 3 BASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 IGHV3-72-202ENST00000621503 303 ntBASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 AC134312.5-201ENST00000568031 1313 ntBASIC14.32□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms