Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC39Q9UFE4 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC17.61■□□□□ 0.41
CCDC39Q9UFE4 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC39Q9UFE4 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC17.6■□□□□ 0.41
CCDC39Q9UFE4 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
CCDC39Q9UFE4 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC17.6■□□□□ 0.41
CCDC39Q9UFE4 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC39Q9UFE4 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC39Q9UFE4 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC39Q9UFE4 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC39Q9UFE4 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC39Q9UFE4 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC39Q9UFE4 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC17.6■□□□□ 0.41
CCDC39Q9UFE4 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
CCDC39Q9UFE4 CICP8-201ENST00000455800 2813 ntBASIC17.6■□□□□ 0.41
CCDC39Q9UFE4 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
CCDC39Q9UFE4 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC39Q9UFE4 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC39Q9UFE4 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
CCDC39Q9UFE4 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC39Q9UFE4 RAD18-204ENST00000418463 563 ntTSL 4 BASIC17.6■□□□□ 0.41
CCDC39Q9UFE4 RAD18-205ENST00000421052 582 ntTSL 3 BASIC17.6■□□□□ 0.41
CCDC39Q9UFE4 KRT18P64-201ENST00000434946 1219 ntBASIC17.6■□□□□ 0.41
CCDC39Q9UFE4 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC17.6■□□□□ 0.41
CCDC39Q9UFE4 LINC01115-203ENST00000606068 577 ntBASIC17.6■□□□□ 0.41
CCDC39Q9UFE4 AC006538.3-201ENST00000612495 578 ntBASIC17.6■□□□□ 0.41
CCDC39Q9UFE4 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC17.6■□□□□ 0.41
CCDC39Q9UFE4 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC17.6■□□□□ 0.41
CCDC39Q9UFE4 AF228730.6-201ENST00000641497 218 ntBASIC17.6■□□□□ 0.41
CCDC39Q9UFE4 AC084121.3-201ENST00000641716 218 ntBASIC17.6■□□□□ 0.41
CCDC39Q9UFE4 AL109936.8-201ENST00000641772 604 ntBASIC17.6■□□□□ 0.41
CCDC39Q9UFE4 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC39Q9UFE4 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC39Q9UFE4 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC39Q9UFE4 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC17.6■□□□□ 0.41
CCDC39Q9UFE4 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC39Q9UFE4 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
CCDC39Q9UFE4 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC39Q9UFE4 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC39Q9UFE4 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
CCDC39Q9UFE4 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC17.6■□□□□ 0.41
CCDC39Q9UFE4 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC17.6■□□□□ 0.41
CCDC39Q9UFE4 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
CCDC39Q9UFE4 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC39Q9UFE4 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC17.6■□□□□ 0.41
CCDC39Q9UFE4 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC39Q9UFE4 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC39Q9UFE4 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC39Q9UFE4 SRC-202ENST00000373558 4304 ntTSL 5 BASIC17.6■□□□□ 0.41
CCDC39Q9UFE4 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC17.6■□□□□ 0.41
CCDC39Q9UFE4 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC39Q9UFE4 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC17.59■□□□□ 0.41
CCDC39Q9UFE4 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
CCDC39Q9UFE4 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
CCDC39Q9UFE4 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
CCDC39Q9UFE4 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
CCDC39Q9UFE4 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC39Q9UFE4 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC39Q9UFE4 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC39Q9UFE4 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC39Q9UFE4 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC39Q9UFE4 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC39Q9UFE4 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC39Q9UFE4 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC39Q9UFE4 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
CCDC39Q9UFE4 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC17.59■□□□□ 0.41
CCDC39Q9UFE4 TK1-203ENST00000588734 1681 ntTSL 2 BASIC17.59■□□□□ 0.41
CCDC39Q9UFE4 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC39Q9UFE4 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC39Q9UFE4 AMT-224ENST00000635808 1610 ntTSL 5 BASIC17.59■□□□□ 0.41
CCDC39Q9UFE4 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC17.59■□□□□ 0.41
CCDC39Q9UFE4 WASH3P-207ENST00000560956 1394 ntBASIC17.59■□□□□ 0.41
CCDC39Q9UFE4 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
CCDC39Q9UFE4 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC39Q9UFE4 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC39Q9UFE4 AL133267.1-201ENST00000398220 340 ntBASIC17.59■□□□□ 0.41
CCDC39Q9UFE4 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC17.59■□□□□ 0.41
CCDC39Q9UFE4 AC241585.1-201ENST00000433527 519 ntBASIC17.59■□□□□ 0.41
CCDC39Q9UFE4 RPL13P2-201ENST00000440687 659 ntBASIC17.59■□□□□ 0.41
CCDC39Q9UFE4 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC17.59■□□□□ 0.41
CCDC39Q9UFE4 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC17.59■□□□□ 0.41
CCDC39Q9UFE4 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC17.59■□□□□ 0.41
CCDC39Q9UFE4 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC17.59■□□□□ 0.41
CCDC39Q9UFE4 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC17.59■□□□□ 0.41
CCDC39Q9UFE4 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC17.59■□□□□ 0.41
CCDC39Q9UFE4 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC39Q9UFE4 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC39Q9UFE4 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC39Q9UFE4 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC39Q9UFE4 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC39Q9UFE4 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC39Q9UFE4 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC39Q9UFE4 TCAF1P1-201ENST00000414990 2232 ntBASIC17.59■□□□□ 0.41
CCDC39Q9UFE4 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC17.59■□□□□ 0.41
CCDC39Q9UFE4 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC39Q9UFE4 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC17.59■□□□□ 0.41
CCDC39Q9UFE4 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC17.59■□□□□ 0.41
CCDC39Q9UFE4 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
CCDC39Q9UFE4 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC17.58■□□□□ 0.41
CCDC39Q9UFE4 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 61.7 ms