Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC15.06■□□□□ 0
TRIM39Q9HCM9 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC15.06■□□□□ 0
TRIM39Q9HCM9 HLA-K-203ENST00000430151 1046 ntBASIC15.06■□□□□ 0
TRIM39Q9HCM9 C2orf27AP3-201ENST00000434123 579 ntBASIC15.06■□□□□ 0
TRIM39Q9HCM9 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC15.06■□□□□ 0
TRIM39Q9HCM9 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC15.06■□□□□ 0
TRIM39Q9HCM9 CROCCP4-201ENST00000457096 498 ntBASIC15.06■□□□□ 0
TRIM39Q9HCM9 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
TRIM39Q9HCM9 FTH1P14-201ENST00000482930 551 ntBASIC15.06■□□□□ 0
TRIM39Q9HCM9 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC15.06■□□□□ 0
TRIM39Q9HCM9 AC022616.1-201ENST00000518688 554 ntBASIC15.06■□□□□ 0
TRIM39Q9HCM9 PUDP-206ENST00000540122 825 ntTSL 2 BASIC15.06■□□□□ 0
TRIM39Q9HCM9 HILS1-202ENST00000545329 423 ntBASIC15.06■□□□□ 0
TRIM39Q9HCM9 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
TRIM39Q9HCM9 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC15.06■□□□□ 0
TRIM39Q9HCM9 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC15.06■□□□□ 0
TRIM39Q9HCM9 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
TRIM39Q9HCM9 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC15.06■□□□□ 0
TRIM39Q9HCM9 AL354718.3-201ENST00000616414 581 ntBASIC15.06■□□□□ 0
TRIM39Q9HCM9 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
TRIM39Q9HCM9 AC132938.4-201ENST00000623835 848 ntBASIC15.06■□□□□ 0
TRIM39Q9HCM9 CR382287.1-201ENST00000623954 586 ntBASIC15.06■□□□□ 0
TRIM39Q9HCM9 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC15.06■□□□□ 0
TRIM39Q9HCM9 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC15.06■□□□□ 0
TRIM39Q9HCM9 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
TRIM39Q9HCM9 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
TRIM39Q9HCM9 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
TRIM39Q9HCM9 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
TRIM39Q9HCM9 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC15.06■□□□□ 0
TRIM39Q9HCM9 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC15.06■□□□□ 0
TRIM39Q9HCM9 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
TRIM39Q9HCM9 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC15.06■□□□□ 0
TRIM39Q9HCM9 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC15.06■□□□□ 0
TRIM39Q9HCM9 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC15.06■□□□□ 0
TRIM39Q9HCM9 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC15.05■□□□□ 0
TRIM39Q9HCM9 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC15.05■□□□□ 0
TRIM39Q9HCM9 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC15.05■□□□□ 0
TRIM39Q9HCM9 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
TRIM39Q9HCM9 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ 0
TRIM39Q9HCM9 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ 0
TRIM39Q9HCM9 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
TRIM39Q9HCM9 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC15.05■□□□□ 0
TRIM39Q9HCM9 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC15.05■□□□□ -0
TRIM39Q9HCM9 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC15.05■□□□□ -0
TRIM39Q9HCM9 ARSEP1-201ENST00000420443 635 ntBASIC15.05■□□□□ -0
TRIM39Q9HCM9 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC15.05■□□□□ -0
TRIM39Q9HCM9 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC15.05■□□□□ -0
TRIM39Q9HCM9 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC15.05■□□□□ -0
TRIM39Q9HCM9 RPL28-206ENST00000558752 671 ntTSL 3 BASIC15.05■□□□□ -0
TRIM39Q9HCM9 AC025279.2-201ENST00000569730 653 ntBASIC15.05■□□□□ -0
TRIM39Q9HCM9 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
TRIM39Q9HCM9 GNRHR2-203ENST00000581100 1187 ntBASIC15.05■□□□□ -0
TRIM39Q9HCM9 AC017083.2-201ENST00000608069 979 ntBASIC15.05■□□□□ -0
TRIM39Q9HCM9 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC15.05■□□□□ -0
TRIM39Q9HCM9 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
TRIM39Q9HCM9 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC15.05■□□□□ -0
TRIM39Q9HCM9 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
TRIM39Q9HCM9 AL138709.1-201ENST00000614840 1693 ntBASIC15.05■□□□□ -0
TRIM39Q9HCM9 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
TRIM39Q9HCM9 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
TRIM39Q9HCM9 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
TRIM39Q9HCM9 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC15.05■□□□□ -0
TRIM39Q9HCM9 SLC9A7P1-202ENST00000556476 2239 ntBASIC15.05■□□□□ -0
TRIM39Q9HCM9 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
TRIM39Q9HCM9 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
TRIM39Q9HCM9 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC15.05■□□□□ -0
TRIM39Q9HCM9 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
TRIM39Q9HCM9 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC15.05■□□□□ -0
TRIM39Q9HCM9 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC15.05■□□□□ -0
TRIM39Q9HCM9 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
TRIM39Q9HCM9 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC15.05■□□□□ -0
TRIM39Q9HCM9 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
TRIM39Q9HCM9 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
TRIM39Q9HCM9 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC15.05■□□□□ -0
TRIM39Q9HCM9 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
TRIM39Q9HCM9 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
TRIM39Q9HCM9 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
TRIM39Q9HCM9 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
TRIM39Q9HCM9 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
TRIM39Q9HCM9 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
TRIM39Q9HCM9 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
TRIM39Q9HCM9 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
TRIM39Q9HCM9 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
TRIM39Q9HCM9 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC15.04■□□□□ -0
TRIM39Q9HCM9 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
TRIM39Q9HCM9 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
TRIM39Q9HCM9 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC15.04■□□□□ -0
TRIM39Q9HCM9 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC15.04■□□□□ -0
TRIM39Q9HCM9 AP000845.1-201ENST00000581677 2131 ntBASIC15.04■□□□□ -0
TRIM39Q9HCM9 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
TRIM39Q9HCM9 AL157414.3-201ENST00000624276 1954 ntBASIC15.04■□□□□ -0
TRIM39Q9HCM9 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
TRIM39Q9HCM9 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
TRIM39Q9HCM9 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
TRIM39Q9HCM9 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC15.04■□□□□ -0
TRIM39Q9HCM9 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
TRIM39Q9HCM9 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC15.04■□□□□ -0
TRIM39Q9HCM9 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC15.04■□□□□ -0
TRIM39Q9HCM9 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
TRIM39Q9HCM9 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms