Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC16.27■□□□□ 0.2
LRCH3Q96II8 C11orf49-203ENST00000378618 1166 ntTSL 5 BASIC16.27■□□□□ 0.2
LRCH3Q96II8 NDUFS7-203ENST00000414651 841 ntTSL 5 BASIC16.27■□□□□ 0.2
LRCH3Q96II8 AL606748.1-201ENST00000423919 655 ntTSL 3 BASIC16.27■□□□□ 0.2
LRCH3Q96II8 GCSHP3-201ENST00000431120 391 ntBASIC16.27■□□□□ 0.2
LRCH3Q96II8 AC114763.1-201ENST00000431985 928 ntTSL 2 BASIC16.27■□□□□ 0.2
LRCH3Q96II8 AC244197.1-201ENST00000456494 951 ntBASIC16.27■□□□□ 0.2
LRCH3Q96II8 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
LRCH3Q96II8 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC16.27■□□□□ 0.2
LRCH3Q96II8 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC16.27■□□□□ 0.2
LRCH3Q96II8 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
LRCH3Q96II8 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC16.27■□□□□ 0.2
LRCH3Q96II8 SNX11-210ENST00000582104 1282 ntTSL 2 BASIC16.27■□□□□ 0.2
LRCH3Q96II8 AC011481.2-201ENST00000585408 426 ntTSL 3 BASIC16.27■□□□□ 0.2
LRCH3Q96II8 AC021016.3-201ENST00000608367 477 ntBASIC16.27■□□□□ 0.2
LRCH3Q96II8 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
LRCH3Q96II8 AL592424.1-201ENST00000563624 1536 ntBASIC16.27■□□□□ 0.2
LRCH3Q96II8 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LRCH3Q96II8 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LRCH3Q96II8 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC16.27■□□□□ 0.2
LRCH3Q96II8 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LRCH3Q96II8 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LRCH3Q96II8 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
LRCH3Q96II8 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
LRCH3Q96II8 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
LRCH3Q96II8 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
LRCH3Q96II8 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC16.27■□□□□ 0.19
LRCH3Q96II8 AMT-224ENST00000635808 1610 ntTSL 5 BASIC16.27■□□□□ 0.19
LRCH3Q96II8 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LRCH3Q96II8 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
LRCH3Q96II8 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
LRCH3Q96II8 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
LRCH3Q96II8 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC16.26■□□□□ 0.19
LRCH3Q96II8 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC16.26■□□□□ 0.19
LRCH3Q96II8 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LRCH3Q96II8 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
LRCH3Q96II8 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
LRCH3Q96II8 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
LRCH3Q96II8 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LRCH3Q96II8 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC16.26■□□□□ 0.19
LRCH3Q96II8 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LRCH3Q96II8 TNNI2-201ENST00000252898 678 ntAPPRIS P3 TSL 3 BASIC16.26■□□□□ 0.19
LRCH3Q96II8 OBSCN-AS1-201ENST00000295012 889 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LRCH3Q96II8 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LRCH3Q96II8 TNNI2-202ENST00000381905 706 ntAPPRIS ALT1 TSL 3 BASIC16.26■□□□□ 0.19
LRCH3Q96II8 TNNI2-203ENST00000381906 745 ntAPPRIS P3 TSL 3 BASIC16.26■□□□□ 0.19
LRCH3Q96II8 TNNI2-204ENST00000381911 743 ntAPPRIS P3 TSL 2 BASIC16.26■□□□□ 0.19
LRCH3Q96II8 AL583805.1-201ENST00000391389 531 ntBASIC16.26■□□□□ 0.19
LRCH3Q96II8 STK16-203ENST00000409516 895 ntTSL 2 BASIC16.26■□□□□ 0.19
LRCH3Q96II8 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC16.26■□□□□ 0.19
LRCH3Q96II8 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC16.26■□□□□ 0.19
LRCH3Q96II8 HMGB3P14-201ENST00000494195 599 ntBASIC16.26■□□□□ 0.19
LRCH3Q96II8 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC16.26■□□□□ 0.19
LRCH3Q96II8 ZNF268-210ENST00000541211 781 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
LRCH3Q96II8 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC16.26■□□□□ 0.19
LRCH3Q96II8 THY1-209ENST00000580275 578 ntTSL 3 BASIC16.26■□□□□ 0.19
LRCH3Q96II8 AL358472.3-201ENST00000608147 415 ntBASIC16.26■□□□□ 0.19
LRCH3Q96II8 AC084781.1-201ENST00000613737 656 ntBASIC16.26■□□□□ 0.19
LRCH3Q96II8 AC010503.4-201ENST00000615487 688 ntBASIC16.26■□□□□ 0.19
LRCH3Q96II8 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
LRCH3Q96II8 GPR39-203ENST00000622084 900 ntTSL 5 BASIC16.26■□□□□ 0.19
LRCH3Q96II8 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LRCH3Q96II8 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LRCH3Q96II8 GGT3P-204ENST00000453783 1664 ntBASIC16.26■□□□□ 0.19
LRCH3Q96II8 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
LRCH3Q96II8 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC16.26■□□□□ 0.19
LRCH3Q96II8 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC16.26■□□□□ 0.19
LRCH3Q96II8 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
LRCH3Q96II8 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC16.26■□□□□ 0.19
LRCH3Q96II8 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
LRCH3Q96II8 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC16.26■□□□□ 0.19
LRCH3Q96II8 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LRCH3Q96II8 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
LRCH3Q96II8 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LRCH3Q96II8 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
LRCH3Q96II8 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
LRCH3Q96II8 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LRCH3Q96II8 AC105917.1-201ENST00000506637 2539 ntBASIC16.25■□□□□ 0.19
LRCH3Q96II8 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
LRCH3Q96II8 CTSV-201ENST00000259470 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LRCH3Q96II8 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
LRCH3Q96II8 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
LRCH3Q96II8 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
LRCH3Q96II8 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LRCH3Q96II8 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
LRCH3Q96II8 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LRCH3Q96II8 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LRCH3Q96II8 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
LRCH3Q96II8 KRT8P21-201ENST00000430398 1491 ntBASIC16.25■□□□□ 0.19
LRCH3Q96II8 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
LRCH3Q96II8 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
LRCH3Q96II8 MMP7-201ENST00000260227 1125 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LRCH3Q96II8 CTSL-202ENST00000342020 933 ntTSL 2 BASIC16.25■□□□□ 0.19
LRCH3Q96II8 AQP7P5-201ENST00000428759 1049 ntBASIC16.25■□□□□ 0.19
LRCH3Q96II8 AQP7P4-201ENST00000447083 1042 ntBASIC16.25■□□□□ 0.19
LRCH3Q96II8 AQP7P2-201ENST00000453967 1041 ntBASIC16.25■□□□□ 0.19
LRCH3Q96II8 AP000358.1-201ENST00000456260 156 ntBASIC16.25■□□□□ 0.19
LRCH3Q96II8 AC005845.1-201ENST00000539206 653 ntTSL 3 BASIC16.25■□□□□ 0.19
LRCH3Q96II8 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC16.25■□□□□ 0.19
LRCH3Q96II8 NUDT4P2-201ENST00000578341 546 ntBASIC16.25■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms