Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HMGB4Q8WW32 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC15.12■□□□□ 0.01
HMGB4Q8WW32 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
HMGB4Q8WW32 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HMGB4Q8WW32 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC15.12■□□□□ 0.01
HMGB4Q8WW32 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
HMGB4Q8WW32 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC15.12■□□□□ 0.01
HMGB4Q8WW32 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HMGB4Q8WW32 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC15.12■□□□□ 0.01
HMGB4Q8WW32 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
HMGB4Q8WW32 NUP210P1-202ENST00000504322 710 ntBASIC15.12■□□□□ 0.01
HMGB4Q8WW32 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC15.12■□□□□ 0.01
HMGB4Q8WW32 AC024681.1-201ENST00000521917 487 ntBASIC15.12■□□□□ 0.01
HMGB4Q8WW32 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC15.12■□□□□ 0.01
HMGB4Q8WW32 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HMGB4Q8WW32 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC15.12■□□□□ 0.01
HMGB4Q8WW32 SYT17-208ENST00000568433 812 ntTSL 3 BASIC15.12■□□□□ 0.01
HMGB4Q8WW32 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC15.12■□□□□ 0.01
HMGB4Q8WW32 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HMGB4Q8WW32 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
HMGB4Q8WW32 AL805961.1-203ENST00000641078 1258 ntBASIC15.12■□□□□ 0.01
HMGB4Q8WW32 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HMGB4Q8WW32 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HMGB4Q8WW32 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HMGB4Q8WW32 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
HMGB4Q8WW32 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
HMGB4Q8WW32 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC15.12■□□□□ 0.01
HMGB4Q8WW32 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HMGB4Q8WW32 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HMGB4Q8WW32 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC15.12■□□□□ 0.01
HMGB4Q8WW32 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
HMGB4Q8WW32 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
HMGB4Q8WW32 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
HMGB4Q8WW32 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HMGB4Q8WW32 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HMGB4Q8WW32 INE2-201ENST00000630399 1874 ntBASIC15.12■□□□□ 0.01
HMGB4Q8WW32 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC15.12■□□□□ 0.01
HMGB4Q8WW32 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HMGB4Q8WW32 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HMGB4Q8WW32 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HMGB4Q8WW32 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HMGB4Q8WW32 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HMGB4Q8WW32 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HMGB4Q8WW32 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HMGB4Q8WW32 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HMGB4Q8WW32 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC15.11■□□□□ 0.01
HMGB4Q8WW32 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HMGB4Q8WW32 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HMGB4Q8WW32 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
HMGB4Q8WW32 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HMGB4Q8WW32 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
HMGB4Q8WW32 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HMGB4Q8WW32 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HMGB4Q8WW32 RN7SKP175-201ENST00000408472 289 ntBASIC15.11■□□□□ 0.01
HMGB4Q8WW32 SLC16A6P1-201ENST00000413214 1059 ntBASIC15.11■□□□□ 0.01
HMGB4Q8WW32 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC15.11■□□□□ 0.01
HMGB4Q8WW32 MPRIPP1-201ENST00000452433 1089 ntBASIC15.11■□□□□ 0.01
HMGB4Q8WW32 AC012618.1-201ENST00000461223 412 ntBASIC15.11■□□□□ 0.01
HMGB4Q8WW32 SUPT4H1P2-201ENST00000501248 353 ntBASIC15.11■□□□□ 0.01
HMGB4Q8WW32 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC15.11■□□□□ 0.01
HMGB4Q8WW32 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC15.11■□□□□ 0.01
HMGB4Q8WW32 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC15.11■□□□□ 0.01
HMGB4Q8WW32 RN7SL574P-201ENST00000581512 297 ntBASIC15.11■□□□□ 0.01
HMGB4Q8WW32 MIR4706-201ENST00000582134 82 ntBASIC15.11■□□□□ 0.01
HMGB4Q8WW32 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC15.11■□□□□ 0.01
HMGB4Q8WW32 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC15.11■□□□□ 0.01
HMGB4Q8WW32 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC15.11■□□□□ 0.01
HMGB4Q8WW32 AL162426.1-201ENST00000624141 743 ntBASIC15.11■□□□□ 0.01
HMGB4Q8WW32 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
HMGB4Q8WW32 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HMGB4Q8WW32 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC15.11■□□□□ 0.01
HMGB4Q8WW32 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC15.11■□□□□ 0.01
HMGB4Q8WW32 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC15.11■□□□□ 0.01
HMGB4Q8WW32 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HMGB4Q8WW32 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC15.11■□□□□ 0.01
HMGB4Q8WW32 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC15.11■□□□□ 0.01
HMGB4Q8WW32 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
HMGB4Q8WW32 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
HMGB4Q8WW32 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC15.11■□□□□ 0.01
HMGB4Q8WW32 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
HMGB4Q8WW32 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HMGB4Q8WW32 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC15.11■□□□□ 0.01
HMGB4Q8WW32 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC15.11■□□□□ 0.01
HMGB4Q8WW32 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
HMGB4Q8WW32 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
HMGB4Q8WW32 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HMGB4Q8WW32 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC15.1■□□□□ 0.01
HMGB4Q8WW32 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HMGB4Q8WW32 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HMGB4Q8WW32 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC15.1■□□□□ 0.01
HMGB4Q8WW32 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HMGB4Q8WW32 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
HMGB4Q8WW32 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC15.1■□□□□ 0.01
HMGB4Q8WW32 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HMGB4Q8WW32 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HMGB4Q8WW32 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HMGB4Q8WW32 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
HMGB4Q8WW32 PAUPAR-201ENST00000630360 2965 ntBASIC15.1■□□□□ 0.01
HMGB4Q8WW32 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
HMGB4Q8WW32 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 114.9 ms