Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC13.45□□□□□ -0.26
SKA3Q8IX90 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
SKA3Q8IX90 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
SKA3Q8IX90 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC13.45□□□□□ -0.26
SKA3Q8IX90 CICP24-201ENST00000605464 2705 ntBASIC13.45□□□□□ -0.26
SKA3Q8IX90 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
SKA3Q8IX90 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SKA3Q8IX90 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC13.45□□□□□ -0.26
SKA3Q8IX90 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
SKA3Q8IX90 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC13.45□□□□□ -0.26
SKA3Q8IX90 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC13.45□□□□□ -0.26
SKA3Q8IX90 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SKA3Q8IX90 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
SKA3Q8IX90 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
SKA3Q8IX90 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC13.45□□□□□ -0.26
SKA3Q8IX90 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
SKA3Q8IX90 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
SKA3Q8IX90 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SKA3Q8IX90 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SKA3Q8IX90 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SKA3Q8IX90 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SKA3Q8IX90 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC13.45□□□□□ -0.26
SKA3Q8IX90 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC13.45□□□□□ -0.26
SKA3Q8IX90 GLI4-203ENST00000517468 963 ntTSL 5 BASIC13.45□□□□□ -0.26
SKA3Q8IX90 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
SKA3Q8IX90 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC13.45□□□□□ -0.26
SKA3Q8IX90 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC13.45□□□□□ -0.26
SKA3Q8IX90 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC13.45□□□□□ -0.26
SKA3Q8IX90 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC13.45□□□□□ -0.26
SKA3Q8IX90 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC13.45□□□□□ -0.26
SKA3Q8IX90 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC13.45□□□□□ -0.26
SKA3Q8IX90 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
SKA3Q8IX90 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC13.45□□□□□ -0.26
SKA3Q8IX90 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC13.45□□□□□ -0.26
SKA3Q8IX90 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
SKA3Q8IX90 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SKA3Q8IX90 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
SKA3Q8IX90 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SKA3Q8IX90 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC13.45□□□□□ -0.26
SKA3Q8IX90 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
SKA3Q8IX90 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
SKA3Q8IX90 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SKA3Q8IX90 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC13.45□□□□□ -0.26
SKA3Q8IX90 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
SKA3Q8IX90 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SKA3Q8IX90 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SKA3Q8IX90 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SKA3Q8IX90 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
SKA3Q8IX90 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC13.45□□□□□ -0.26
SKA3Q8IX90 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
SKA3Q8IX90 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
SKA3Q8IX90 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC13.45□□□□□ -0.26
SKA3Q8IX90 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
SKA3Q8IX90 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC13.44□□□□□ -0.26
SKA3Q8IX90 GSN-215ENST00000545652 2428 ntTSL 2 BASIC13.44□□□□□ -0.26
SKA3Q8IX90 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
SKA3Q8IX90 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
SKA3Q8IX90 SLC9A7P1-202ENST00000556476 2239 ntBASIC13.44□□□□□ -0.26
SKA3Q8IX90 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC13.44□□□□□ -0.26
SKA3Q8IX90 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
SKA3Q8IX90 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SKA3Q8IX90 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC13.44□□□□□ -0.26
SKA3Q8IX90 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC13.44□□□□□ -0.26
SKA3Q8IX90 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC13.44□□□□□ -0.26
SKA3Q8IX90 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SKA3Q8IX90 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC13.44□□□□□ -0.26
SKA3Q8IX90 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SKA3Q8IX90 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
SKA3Q8IX90 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
SKA3Q8IX90 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
SKA3Q8IX90 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
SKA3Q8IX90 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC13.44□□□□□ -0.26
SKA3Q8IX90 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
SKA3Q8IX90 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
SKA3Q8IX90 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SKA3Q8IX90 TEX30-203ENST00000376022 828 ntTSL 2 BASIC13.44□□□□□ -0.26
SKA3Q8IX90 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SKA3Q8IX90 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC13.44□□□□□ -0.26
SKA3Q8IX90 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC13.44□□□□□ -0.26
SKA3Q8IX90 MPV17-208ENST00000405076 603 ntTSL 5 BASIC13.44□□□□□ -0.26
SKA3Q8IX90 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
SKA3Q8IX90 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC13.44□□□□□ -0.26
SKA3Q8IX90 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC13.44□□□□□ -0.26
SKA3Q8IX90 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
SKA3Q8IX90 AP001582.1-201ENST00000525856 295 ntBASIC13.44□□□□□ -0.26
SKA3Q8IX90 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC13.44□□□□□ -0.26
SKA3Q8IX90 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC13.44□□□□□ -0.26
SKA3Q8IX90 COQ6-210ENST00000554920 649 ntTSL 3 BASIC13.44□□□□□ -0.26
SKA3Q8IX90 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
SKA3Q8IX90 PAM16-204ENST00000571941 674 ntTSL 3 BASIC13.44□□□□□ -0.26
SKA3Q8IX90 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC13.44□□□□□ -0.26
SKA3Q8IX90 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
SKA3Q8IX90 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC13.44□□□□□ -0.26
SKA3Q8IX90 AC027307.3-201ENST00000594262 1100 ntBASIC13.44□□□□□ -0.26
SKA3Q8IX90 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC13.44□□□□□ -0.26
SKA3Q8IX90 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SKA3Q8IX90 AC025048.6-201ENST00000634326 1161 ntBASIC13.44□□□□□ -0.26
SKA3Q8IX90 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC13.44□□□□□ -0.26
SKA3Q8IX90 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
SKA3Q8IX90 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms