Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 SLC25A35-203ENST00000579192 2136 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 AC024243.1-201ENST00000609234 778 ntBASIC9.36□□□□□ -0.91
LINC00643Q86TS7 AC011767.1-201ENST00000617410 1153 ntBASIC9.36□□□□□ -0.91
LINC00643Q86TS7 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 AL021155.1-201ENST00000438808 2637 ntBASIC9.36□□□□□ -0.91
LINC00643Q86TS7 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 ZNF75D-202ENST00000370766 5592 ntAPPRIS P3 TSL 1 (best) BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 ASAH2B-202ENST00000374007 3715 ntAPPRIS P1 TSL 3 BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 AHI1-205ENST00000457866 5549 ntAPPRIS P2 TSL 1 (best) BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 AC141928.1-201ENST00000511928 4525 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 CAMTA2-202ENST00000361571 4777 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 LRCH1-203ENST00000389798 4131 ntAPPRIS P3 TSL 1 (best) BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 BCL2L2-201ENST00000250405 3605 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 B3GAT2-202ENST00000615536 5206 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 INTS6L-201ENST00000370752 3793 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 PPP1R11-204ENST00000376769 1689 ntTSL 2 BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 LINC00567-201ENST00000569854 3409 ntBASIC9.35□□□□□ -0.91
LINC00643Q86TS7 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 DDC-213ENST00000617822 1809 ntTSL 3 BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 GRIP2-206ENST00000637182 3727 ntAPPRIS ALT2 TSL 5 BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 BIVM-ERCC5-205ENST00000639435 5632 ntAPPRIS P5 TSL 5 BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 KLF8-202ENST00000374928 4821 ntTSL 2 BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 RNFT2-201ENST00000257575 3882 ntAPPRIS P1 TSL 5 BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 ADIRF-AS1-203ENST00000609111 3822 ntTSL 2 BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 GAS8-201ENST00000268699 3185 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 LEPROTL1-201ENST00000321250 3173 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 RPS27L-201ENST00000330964 6434 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 UNC13B-207ENST00000619578 6426 ntAPPRIS ALT2 TSL 1 (best) BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 DDX54-202ENST00000314045 4380 ntAPPRIS ALT2 TSL 1 (best) BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 ZDHHC7-201ENST00000313732 3442 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 PARP10-205ENST00000525773 3404 ntAPPRIS ALT2 TSL 2 BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 PLEKHA2-207ENST00000616834 3594 ntTSL 5 BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 PHC2-201ENST00000257118 3870 ntAPPRIS P4 TSL 1 (best) BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 BCL9-201ENST00000234739 6278 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 NDUFAF7-201ENST00000002125 2176 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 CCDC114-201ENST00000315396 3215 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 H1FX-AS1-201ENST00000383461 2600 ntTSL 2 BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 NABP1-203ENST00000409510 843 ntTSL 5 BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 AC009336.2-201ENST00000468418 3521 ntAPPRIS P1 TSL 5 BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 AP003041.3-201ENST00000527151 707 ntBASIC9.35□□□□□ -0.91
LINC00643Q86TS7 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 LRTM2-208ENST00000543818 3986 ntAPPRIS P1 TSL 2 BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 AC137761.2-201ENST00000561729 223 ntBASIC9.35□□□□□ -0.91
LINC00643Q86TS7 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 AC145350.3-201ENST00000569033 163 ntBASIC9.35□□□□□ -0.91
LINC00643Q86TS7 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 CYGB-204ENST00000589342 815 ntTSL 3 BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 LAMTOR5-AS1-209ENST00000597455 805 ntBASIC9.35□□□□□ -0.91
LINC00643Q86TS7 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 PRAMEF25-201ENST00000614839 1863 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 PRAMEF26-201ENST00000624207 1863 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 CR392000.1-201ENST00000624770 1228 ntBASIC9.35□□□□□ -0.91
LINC00643Q86TS7 RGS12-201ENST00000336727 4674 ntAPPRIS P4 TSL 1 (best) BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 SARDH-204ENST00000371872 3344 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 LPP-AS2-201ENST00000605573 2852 ntBASIC9.35□□□□□ -0.91
LINC00643Q86TS7 C3orf20-202ENST00000412910 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 AL354702.1-201ENST00000442006 1960 ntBASIC9.35□□□□□ -0.91
LINC00643Q86TS7 PIWIL1-201ENST00000245255 3897 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 WIPI1-201ENST00000262139 1832 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 GMPS-203ENST00000496455 8751 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 GRM7-201ENST00000357716 4127 ntAPPRIS P2 TSL 1 (best) BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 TSPEAR-201ENST00000323084 3967 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 AC012485.1-201ENST00000456601 2509 ntTSL 2 BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 RELA-227ENST00000615805 2236 ntTSL 5 BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 DRC7-203ENST00000394337 2906 ntAPPRIS P3 TSL 1 (best) BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 ITPRIPL1-204ENST00000439118 1946 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 AC093899.2-201ENST00000513963 1935 ntAPPRIS P1 TSL 2 BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC9.35□□□□□ -0.91
LINC00643Q86TS7 CHD4-211ENST00000544484 6554 ntTSL 2 BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 IL10-202ENST00000423557 1630 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms