Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 HDAC2-AS2-203ENST00000436876 591 ntTSL 5 BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 AC100827.2-201ENST00000563214 1194 ntBASIC10.25□□□□□ -0.77
CSMD3Q7Z407 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 AL590440.2-201ENST00000641973 1595 ntBASIC10.25□□□□□ -0.77
CSMD3Q7Z407 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 ERCC1-208ENST00000589165 1453 ntAPPRIS P1 TSL 5 BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 API5-208ENST00000531273 1868 ntTSL 2 BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 FTX-216ENST00000638985 1367 ntTSL 5 BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 Metazoa_SRP.4-201ENST00000366232 298 ntBASIC10.24□□□□□ -0.77
CSMD3Q7Z407 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 OR2R1P-201ENST00000441404 914 ntBASIC10.24□□□□□ -0.77
CSMD3Q7Z407 RN7SL494P-201ENST00000461517 304 ntBASIC10.24□□□□□ -0.77
CSMD3Q7Z407 AC105390.1-201ENST00000511330 560 ntTSL 4 BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 MRPS36-204ENST00000512880 1200 ntTSL 5 BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 AC022858.1-202ENST00000521084 393 ntTSL 3 BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 DUT-207ENST00000559416 635 ntTSL 2 BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 AL132801.1-201ENST00000559675 567 ntTSL 4 BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 MRPS36-205ENST00000602380 1200 ntTSL 2 BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 NOP16-211ENST00000621444 954 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 HELLS-212ENST00000630929 400 ntTSL 5 BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 SGCA-201ENST00000262018 1432 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 CTBP2P8-201ENST00000422584 1330 ntBASIC10.24□□□□□ -0.77
CSMD3Q7Z407 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 AL672207.1-201ENST00000328462 1570 ntBASIC10.24□□□□□ -0.77
CSMD3Q7Z407 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 AC007319.1-201ENST00000453517 802 ntTSL 3 BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 RN7SL81P-201ENST00000493781 261 ntBASIC10.24□□□□□ -0.77
CSMD3Q7Z407 AP003390.1-201ENST00000533253 523 ntTSL 5 BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 AC005845.1-201ENST00000539206 653 ntTSL 3 BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 BRSK1-203ENST00000585418 1104 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 AC025048.2-201ENST00000590744 786 ntTSL 2 BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 OR2K2-201ENST00000302681 1078 ntAPPRIS P1 BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 LCE3B-201ENST00000335633 288 ntAPPRIS P1 BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 PRB3-202ENST00000538488 1283 ntAPPRIS P5 TSL 5 BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 SNX11-210ENST00000582104 1282 ntTSL 2 BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 AC023090.1-201ENST00000592906 502 ntTSL 3 BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 PSMC4-202ENST00000455878 1333 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 MARK2P16-201ENST00000605714 1723 ntBASIC10.24□□□□□ -0.77
CSMD3Q7Z407 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
CSMD3Q7Z407 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC10.23□□□□□ -0.77
CSMD3Q7Z407 RBM4B-201ENST00000310046 1840 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
CSMD3Q7Z407 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC10.23□□□□□ -0.77
CSMD3Q7Z407 PLAC9-203ENST00000372270 534 ntAPPRIS ALT2 TSL 2 BASIC10.23□□□□□ -0.77
CSMD3Q7Z407 AC053503.3-201ENST00000448375 114 ntBASIC10.23□□□□□ -0.77
CSMD3Q7Z407 AC244197.1-201ENST00000456494 951 ntBASIC10.23□□□□□ -0.77
CSMD3Q7Z407 AP003398.1-201ENST00000531124 318 ntBASIC10.23□□□□□ -0.77
CSMD3Q7Z407 AC108471.2-201ENST00000533736 1061 ntTSL 3 BASIC10.23□□□□□ -0.77
CSMD3Q7Z407 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC10.23□□□□□ -0.77
CSMD3Q7Z407 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
CSMD3Q7Z407 CCDC51-206ENST00000447018 1461 ntTSL 2 BASIC10.23□□□□□ -0.77
CSMD3Q7Z407 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC10.23□□□□□ -0.77
CSMD3Q7Z407 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC10.23□□□□□ -0.77
CSMD3Q7Z407 BBS1-203ENST00000455748 1552 ntTSL 2 BASIC10.23□□□□□ -0.77
CSMD3Q7Z407 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
CSMD3Q7Z407 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC10.23□□□□□ -0.77
CSMD3Q7Z407 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.77
CSMD3Q7Z407 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
CSMD3Q7Z407 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC10.23□□□□□ -0.77
CSMD3Q7Z407 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC10.23□□□□□ -0.77
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms