Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC006122.1-201ENST00000493323 440 ntBASIC18.08■□□□□ 0.49
CCDC88AQ3V6T2 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC18.08■□□□□ 0.49
CCDC88AQ3V6T2 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC18.08■□□□□ 0.49
CCDC88AQ3V6T2 AC011481.2-201ENST00000585408 426 ntTSL 3 BASIC18.08■□□□□ 0.49
CCDC88AQ3V6T2 SIGLEC18P-201ENST00000602271 909 ntBASIC18.08■□□□□ 0.49
CCDC88AQ3V6T2 MYOZ3-209ENST00000615557 1031 ntTSL 2 BASIC18.08■□□□□ 0.49
CCDC88AQ3V6T2 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
CCDC88AQ3V6T2 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC88AQ3V6T2 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC18.08■□□□□ 0.49
CCDC88AQ3V6T2 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC18.08■□□□□ 0.48
CCDC88AQ3V6T2 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
CCDC88AQ3V6T2 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
CCDC88AQ3V6T2 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
CCDC88AQ3V6T2 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC88AQ3V6T2 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
CCDC88AQ3V6T2 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC88AQ3V6T2 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC88AQ3V6T2 WASH3P-207ENST00000560956 1394 ntBASIC18.08■□□□□ 0.48
CCDC88AQ3V6T2 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
CCDC88AQ3V6T2 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC18.08■□□□□ 0.48
CCDC88AQ3V6T2 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC88AQ3V6T2 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC88AQ3V6T2 ABR-203ENST00000536794 2213 ntTSL 2 BASIC18.08■□□□□ 0.48
CCDC88AQ3V6T2 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC88AQ3V6T2 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC88AQ3V6T2 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC88AQ3V6T2 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC88AQ3V6T2 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
CCDC88AQ3V6T2 AC003102.2-201ENST00000589195 1469 ntBASIC18.07■□□□□ 0.48
CCDC88AQ3V6T2 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC88AQ3V6T2 RN7SKP230-201ENST00000365642 335 ntBASIC18.07■□□□□ 0.48
CCDC88AQ3V6T2 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC88AQ3V6T2 AC019118.2-201ENST00000425776 718 ntTSL 5 BASIC18.07■□□□□ 0.48
CCDC88AQ3V6T2 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC88AQ3V6T2 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC18.07■□□□□ 0.48
CCDC88AQ3V6T2 SH3BGR-209ENST00000458295 812 ntTSL 3 BASIC18.07■□□□□ 0.48
CCDC88AQ3V6T2 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
CCDC88AQ3V6T2 PLS3-210ENST00000626746 216 ntTSL 4 BASIC18.07■□□□□ 0.48
CCDC88AQ3V6T2 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC88AQ3V6T2 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC88AQ3V6T2 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC18.07■□□□□ 0.48
CCDC88AQ3V6T2 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC88AQ3V6T2 CELP-203ENST00000624767 2414 ntTSL 5 BASIC18.07■□□□□ 0.48
CCDC88AQ3V6T2 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC88AQ3V6T2 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC18.07■□□□□ 0.48
CCDC88AQ3V6T2 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC88AQ3V6T2 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC88AQ3V6T2 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC18.07■□□□□ 0.48
CCDC88AQ3V6T2 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC88AQ3V6T2 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC88AQ3V6T2 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC18.07■□□□□ 0.48
CCDC88AQ3V6T2 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
CCDC88AQ3V6T2 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC88AQ3V6T2 TMEM176B-201ENST00000326442 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC88AQ3V6T2 SPATA8-201ENST00000328504 1083 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC88AQ3V6T2 SFT2D2-202ENST00000367829 491 ntTSL 5 BASIC18.07■□□□□ 0.48
CCDC88AQ3V6T2 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC18.07■□□□□ 0.48
CCDC88AQ3V6T2 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC88AQ3V6T2 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC18.07■□□□□ 0.48
CCDC88AQ3V6T2 RPS5-204ENST00000598098 536 ntTSL 2 BASIC18.07■□□□□ 0.48
CCDC88AQ3V6T2 MIR6769A-201ENST00000617340 73 ntBASIC18.07■□□□□ 0.48
CCDC88AQ3V6T2 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC88AQ3V6T2 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC88AQ3V6T2 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
CCDC88AQ3V6T2 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC18.07■□□□□ 0.48
CCDC88AQ3V6T2 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC88AQ3V6T2 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC18.07■□□□□ 0.48
CCDC88AQ3V6T2 LINC02537-201ENST00000635943 1367 ntTSL 4 BASIC18.07■□□□□ 0.48
CCDC88AQ3V6T2 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
CCDC88AQ3V6T2 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC18.06■□□□□ 0.48
CCDC88AQ3V6T2 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC18.06■□□□□ 0.48
CCDC88AQ3V6T2 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC88AQ3V6T2 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC88AQ3V6T2 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC18.06■□□□□ 0.48
CCDC88AQ3V6T2 UROS-201ENST00000368774 744 ntTSL 2 BASIC18.06■□□□□ 0.48
CCDC88AQ3V6T2 OR2R1P-201ENST00000441404 914 ntBASIC18.06■□□□□ 0.48
CCDC88AQ3V6T2 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC18.06■□□□□ 0.48
CCDC88AQ3V6T2 C8orf31-207ENST00000524181 1199 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC88AQ3V6T2 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC18.06■□□□□ 0.48
CCDC88AQ3V6T2 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC18.06■□□□□ 0.48
CCDC88AQ3V6T2 ANAPC11-221ENST00000584314 559 ntTSL 2 BASIC18.06■□□□□ 0.48
CCDC88AQ3V6T2 AC133540.1-201ENST00000620845 1019 ntBASIC18.06■□□□□ 0.48
CCDC88AQ3V6T2 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC18.06■□□□□ 0.48
CCDC88AQ3V6T2 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC18.06■□□□□ 0.48
CCDC88AQ3V6T2 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC18.06■□□□□ 0.48
CCDC88AQ3V6T2 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
CCDC88AQ3V6T2 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC18.06■□□□□ 0.48
CCDC88AQ3V6T2 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC88AQ3V6T2 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC88AQ3V6T2 FBXO16-202ENST00000380254 1343 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC88AQ3V6T2 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC18.06■□□□□ 0.48
CCDC88AQ3V6T2 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC88AQ3V6T2 SERPINB9P1-202ENST00000545177 1375 ntTSL 3 BASIC18.06■□□□□ 0.48
CCDC88AQ3V6T2 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC18.06■□□□□ 0.48
CCDC88AQ3V6T2 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
CCDC88AQ3V6T2 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC18.06■□□□□ 0.48
CCDC88AQ3V6T2 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC88AQ3V6T2 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC88AQ3V6T2 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
CCDC88AQ3V6T2 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 67.7 ms