Protein–RNA interactions for Protein: Q2NKJ3

CTC1, CST complex subunit CTC1, humanhuman

Predictions only

Length 1,217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTC1Q2NKJ3 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.18
CTC1Q2NKJ3 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC16.14■□□□□ 0.17
CTC1Q2NKJ3 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC16.14■□□□□ 0.17
CTC1Q2NKJ3 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CTC1Q2NKJ3 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC16.14■□□□□ 0.17
CTC1Q2NKJ3 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC16.14■□□□□ 0.17
CTC1Q2NKJ3 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC16.14■□□□□ 0.17
CTC1Q2NKJ3 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
CTC1Q2NKJ3 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CTC1Q2NKJ3 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC16.14■□□□□ 0.17
CTC1Q2NKJ3 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CTC1Q2NKJ3 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC16.14■□□□□ 0.17
CTC1Q2NKJ3 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC16.14■□□□□ 0.17
CTC1Q2NKJ3 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CTC1Q2NKJ3 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC16.14■□□□□ 0.17
CTC1Q2NKJ3 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC16.14■□□□□ 0.17
CTC1Q2NKJ3 LBH-202ENST00000401506 485 ntTSL 3 BASIC16.14■□□□□ 0.17
CTC1Q2NKJ3 ACTG1P2-201ENST00000415776 1125 ntBASIC16.14■□□□□ 0.17
CTC1Q2NKJ3 ACTG1P11-201ENST00000425411 1125 ntBASIC16.14■□□□□ 0.17
CTC1Q2NKJ3 AC011742.3-201ENST00000439053 820 ntBASIC16.14■□□□□ 0.17
CTC1Q2NKJ3 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC16.14■□□□□ 0.17
CTC1Q2NKJ3 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC16.14■□□□□ 0.17
CTC1Q2NKJ3 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CTC1Q2NKJ3 AP003171.2-201ENST00000528208 925 ntBASIC16.14■□□□□ 0.17
CTC1Q2NKJ3 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC16.14■□□□□ 0.17
CTC1Q2NKJ3 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC16.14■□□□□ 0.17
CTC1Q2NKJ3 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC16.14■□□□□ 0.17
CTC1Q2NKJ3 MIR4750-201ENST00000584564 56 ntBASIC16.14■□□□□ 0.17
CTC1Q2NKJ3 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC16.14■□□□□ 0.17
CTC1Q2NKJ3 AC026740.1-201ENST00000607068 791 ntBASIC16.14■□□□□ 0.17
CTC1Q2NKJ3 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CTC1Q2NKJ3 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CTC1Q2NKJ3 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CTC1Q2NKJ3 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CTC1Q2NKJ3 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CTC1Q2NKJ3 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CTC1Q2NKJ3 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CTC1Q2NKJ3 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CTC1Q2NKJ3 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CTC1Q2NKJ3 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CTC1Q2NKJ3 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC16.14■□□□□ 0.17
CTC1Q2NKJ3 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
CTC1Q2NKJ3 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CTC1Q2NKJ3 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CTC1Q2NKJ3 AC106881.1-201ENST00000605849 3329 ntBASIC16.14■□□□□ 0.17
CTC1Q2NKJ3 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CTC1Q2NKJ3 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CTC1Q2NKJ3 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CTC1Q2NKJ3 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
CTC1Q2NKJ3 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CTC1Q2NKJ3 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC16.13■□□□□ 0.17
CTC1Q2NKJ3 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC16.13■□□□□ 0.17
CTC1Q2NKJ3 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CTC1Q2NKJ3 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CTC1Q2NKJ3 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CTC1Q2NKJ3 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC16.13■□□□□ 0.17
CTC1Q2NKJ3 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CTC1Q2NKJ3 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CTC1Q2NKJ3 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CTC1Q2NKJ3 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
CTC1Q2NKJ3 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CTC1Q2NKJ3 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CTC1Q2NKJ3 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
CTC1Q2NKJ3 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CTC1Q2NKJ3 AL139094.1-201ENST00000405549 1188 ntBASIC16.13■□□□□ 0.17
CTC1Q2NKJ3 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC16.13■□□□□ 0.17
CTC1Q2NKJ3 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC16.13■□□□□ 0.17
CTC1Q2NKJ3 AL355334.1-201ENST00000417713 215 ntBASIC16.13■□□□□ 0.17
CTC1Q2NKJ3 AC012618.1-201ENST00000461223 412 ntBASIC16.13■□□□□ 0.17
CTC1Q2NKJ3 AC100850.1-201ENST00000506768 649 ntBASIC16.13■□□□□ 0.17
CTC1Q2NKJ3 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC16.13■□□□□ 0.17
CTC1Q2NKJ3 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC16.13■□□□□ 0.17
CTC1Q2NKJ3 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC16.13■□□□□ 0.17
CTC1Q2NKJ3 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC16.13■□□□□ 0.17
CTC1Q2NKJ3 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC16.13■□□□□ 0.17
CTC1Q2NKJ3 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CTC1Q2NKJ3 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
CTC1Q2NKJ3 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CTC1Q2NKJ3 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CTC1Q2NKJ3 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
CTC1Q2NKJ3 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC16.13■□□□□ 0.17
CTC1Q2NKJ3 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC16.13■□□□□ 0.17
CTC1Q2NKJ3 TMBIM7P-203ENST00000641617 1718 ntBASIC16.13■□□□□ 0.17
CTC1Q2NKJ3 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CTC1Q2NKJ3 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CTC1Q2NKJ3 LRRC59-203ENST00000576448 1531 ntBASIC16.13■□□□□ 0.17
CTC1Q2NKJ3 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC16.13■□□□□ 0.17
CTC1Q2NKJ3 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC16.13■□□□□ 0.17
CTC1Q2NKJ3 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CTC1Q2NKJ3 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC16.13■□□□□ 0.17
CTC1Q2NKJ3 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CTC1Q2NKJ3 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
CTC1Q2NKJ3 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CTC1Q2NKJ3 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC16.13■□□□□ 0.17
CTC1Q2NKJ3 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
CTC1Q2NKJ3 KRT8P29-201ENST00000420409 1371 ntBASIC16.13■□□□□ 0.17
CTC1Q2NKJ3 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC16.12■□□□□ 0.17
CTC1Q2NKJ3 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC16.12■□□□□ 0.17
CTC1Q2NKJ3 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC16.12■□□□□ 0.17
CTC1Q2NKJ3 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms