Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
TFF3Q07654 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
TFF3Q07654 RPS2P36-201ENST00000456516 831 ntBASIC13.28□□□□□ -0.28
TFF3Q07654 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC13.28□□□□□ -0.28
TFF3Q07654 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC13.28□□□□□ -0.28
TFF3Q07654 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC13.28□□□□□ -0.28
TFF3Q07654 AL023803.2-201ENST00000620080 638 ntBASIC13.28□□□□□ -0.28
TFF3Q07654 MIR6727-201ENST00000620702 65 ntBASIC13.28□□□□□ -0.28
TFF3Q07654 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC13.28□□□□□ -0.28
TFF3Q07654 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
TFF3Q07654 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
TFF3Q07654 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
TFF3Q07654 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
TFF3Q07654 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
TFF3Q07654 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC13.28□□□□□ -0.28
TFF3Q07654 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC13.28□□□□□ -0.28
TFF3Q07654 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
TFF3Q07654 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
TFF3Q07654 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
TFF3Q07654 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC13.28□□□□□ -0.28
TFF3Q07654 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
TFF3Q07654 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC13.28□□□□□ -0.28
TFF3Q07654 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC13.28□□□□□ -0.28
TFF3Q07654 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
TFF3Q07654 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
TFF3Q07654 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
TFF3Q07654 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC13.28□□□□□ -0.28
TFF3Q07654 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
TFF3Q07654 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
TFF3Q07654 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC13.27□□□□□ -0.28
TFF3Q07654 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
TFF3Q07654 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC13.27□□□□□ -0.28
TFF3Q07654 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
TFF3Q07654 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
TFF3Q07654 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.28
TFF3Q07654 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC13.27□□□□□ -0.28
TFF3Q07654 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
TFF3Q07654 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
TFF3Q07654 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC13.27□□□□□ -0.28
TFF3Q07654 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
TFF3Q07654 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
TFF3Q07654 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.28
TFF3Q07654 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC13.27□□□□□ -0.28
TFF3Q07654 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC13.27□□□□□ -0.28
TFF3Q07654 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC13.27□□□□□ -0.29
TFF3Q07654 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
TFF3Q07654 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
TFF3Q07654 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
TFF3Q07654 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
TFF3Q07654 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
TFF3Q07654 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC13.27□□□□□ -0.29
TFF3Q07654 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
TFF3Q07654 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC13.27□□□□□ -0.29
TFF3Q07654 RN7SL11P-201ENST00000471305 293 ntBASIC13.27□□□□□ -0.29
TFF3Q07654 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC13.27□□□□□ -0.29
TFF3Q07654 AC005740.2-201ENST00000511085 419 ntBASIC13.27□□□□□ -0.29
TFF3Q07654 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.29
TFF3Q07654 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC13.27□□□□□ -0.29
TFF3Q07654 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC13.27□□□□□ -0.29
TFF3Q07654 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC13.27□□□□□ -0.29
TFF3Q07654 RN7SL574P-201ENST00000581512 297 ntBASIC13.27□□□□□ -0.29
TFF3Q07654 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC13.27□□□□□ -0.29
TFF3Q07654 SPCS2P2-201ENST00000603270 608 ntBASIC13.27□□□□□ -0.29
TFF3Q07654 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC13.27□□□□□ -0.29
TFF3Q07654 AC138466.3-201ENST00000619983 221 ntBASIC13.27□□□□□ -0.29
TFF3Q07654 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC13.27□□□□□ -0.29
TFF3Q07654 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
TFF3Q07654 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
TFF3Q07654 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
TFF3Q07654 KRT8P29-201ENST00000420409 1371 ntBASIC13.27□□□□□ -0.29
TFF3Q07654 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC13.27□□□□□ -0.29
TFF3Q07654 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC13.27□□□□□ -0.29
TFF3Q07654 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC13.27□□□□□ -0.29
TFF3Q07654 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
TFF3Q07654 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
TFF3Q07654 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
TFF3Q07654 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC13.27□□□□□ -0.29
TFF3Q07654 PRAL-201ENST00000624952 3286 ntBASIC13.27□□□□□ -0.29
TFF3Q07654 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
TFF3Q07654 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
TFF3Q07654 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
TFF3Q07654 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC13.27□□□□□ -0.29
TFF3Q07654 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
TFF3Q07654 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
TFF3Q07654 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.29
TFF3Q07654 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC13.27□□□□□ -0.29
TFF3Q07654 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC13.27□□□□□ -0.29
TFF3Q07654 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
TFF3Q07654 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC13.27□□□□□ -0.29
TFF3Q07654 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC13.27□□□□□ -0.29
TFF3Q07654 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
TFF3Q07654 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC13.26□□□□□ -0.29
TFF3Q07654 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
TFF3Q07654 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
TFF3Q07654 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
TFF3Q07654 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
TFF3Q07654 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
TFF3Q07654 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
TFF3Q07654 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
TFF3Q07654 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms