Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC13.54□□□□□ -0.24
H3F3AP84243 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC13.54□□□□□ -0.24
H3F3AP84243 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
H3F3AP84243 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
H3F3AP84243 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
H3F3AP84243 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
H3F3AP84243 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
H3F3AP84243 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC13.54□□□□□ -0.24
H3F3AP84243 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
H3F3AP84243 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
H3F3AP84243 AC055811.4-201ENST00000624039 1754 ntBASIC13.54□□□□□ -0.24
H3F3AP84243 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
H3F3AP84243 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC13.54□□□□□ -0.24
H3F3AP84243 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC13.54□□□□□ -0.24
H3F3AP84243 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
H3F3AP84243 TMEM14DP-201ENST00000422205 345 ntBASIC13.54□□□□□ -0.24
H3F3AP84243 GSAP-205ENST00000430584 600 ntTSL 5 BASIC13.54□□□□□ -0.24
H3F3AP84243 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
H3F3AP84243 KRT17P7-201ENST00000451704 1104 ntBASIC13.54□□□□□ -0.24
H3F3AP84243 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
H3F3AP84243 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC13.54□□□□□ -0.24
H3F3AP84243 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC13.54□□□□□ -0.24
H3F3AP84243 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC13.54□□□□□ -0.24
H3F3AP84243 AC106886.1-201ENST00000568660 600 ntBASIC13.54□□□□□ -0.24
H3F3AP84243 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
H3F3AP84243 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC13.54□□□□□ -0.24
H3F3AP84243 RPS15-202ENST00000585665 467 ntTSL 3 BASIC13.54□□□□□ -0.24
H3F3AP84243 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC13.54□□□□□ -0.24
H3F3AP84243 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC13.54□□□□□ -0.24
H3F3AP84243 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
H3F3AP84243 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC13.54□□□□□ -0.24
H3F3AP84243 AC132938.4-201ENST00000623835 848 ntBASIC13.54□□□□□ -0.24
H3F3AP84243 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC13.54□□□□□ -0.24
H3F3AP84243 AL161772.1-201ENST00000610494 4412 ntBASIC13.54□□□□□ -0.24
H3F3AP84243 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC13.54□□□□□ -0.24
H3F3AP84243 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
H3F3AP84243 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC13.54□□□□□ -0.24
H3F3AP84243 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
H3F3AP84243 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC13.54□□□□□ -0.24
H3F3AP84243 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
H3F3AP84243 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
H3F3AP84243 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
H3F3AP84243 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
H3F3AP84243 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
H3F3AP84243 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC13.54□□□□□ -0.24
H3F3AP84243 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
H3F3AP84243 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
H3F3AP84243 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
H3F3AP84243 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
H3F3AP84243 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
H3F3AP84243 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
H3F3AP84243 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
H3F3AP84243 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
H3F3AP84243 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
H3F3AP84243 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
H3F3AP84243 AC023090.2-201ENST00000625182 2110 ntBASIC13.54□□□□□ -0.24
H3F3AP84243 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC13.54□□□□□ -0.24
H3F3AP84243 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
H3F3AP84243 AC013726.1-201ENST00000563747 2285 ntBASIC13.53□□□□□ -0.24
H3F3AP84243 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
H3F3AP84243 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
H3F3AP84243 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
H3F3AP84243 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
H3F3AP84243 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
H3F3AP84243 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC13.53□□□□□ -0.24
H3F3AP84243 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
H3F3AP84243 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
H3F3AP84243 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
H3F3AP84243 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
H3F3AP84243 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC13.53□□□□□ -0.24
H3F3AP84243 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
H3F3AP84243 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
H3F3AP84243 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
H3F3AP84243 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC13.53□□□□□ -0.24
H3F3AP84243 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
H3F3AP84243 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC13.53□□□□□ -0.24
H3F3AP84243 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC13.53□□□□□ -0.24
H3F3AP84243 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC13.53□□□□□ -0.24
H3F3AP84243 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC13.53□□□□□ -0.24
H3F3AP84243 AC026434.2-201ENST00000506094 1078 ntBASIC13.53□□□□□ -0.24
H3F3AP84243 AC106760.1-201ENST00000508690 800 ntBASIC13.53□□□□□ -0.24
H3F3AP84243 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC13.53□□□□□ -0.24
H3F3AP84243 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC13.53□□□□□ -0.24
H3F3AP84243 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC13.53□□□□□ -0.24
H3F3AP84243 RN7SL48P-201ENST00000579283 293 ntBASIC13.53□□□□□ -0.24
H3F3AP84243 APOC4-201ENST00000591600 348 ntTSL 3 BASIC13.53□□□□□ -0.24
H3F3AP84243 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC13.53□□□□□ -0.24
H3F3AP84243 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC13.53□□□□□ -0.24
H3F3AP84243 AL022328.1-201ENST00000610050 478 ntBASIC13.53□□□□□ -0.24
H3F3AP84243 AC063926.2-201ENST00000623766 1308 ntBASIC13.53□□□□□ -0.24
H3F3AP84243 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
H3F3AP84243 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC13.53□□□□□ -0.24
H3F3AP84243 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC13.53□□□□□ -0.24
H3F3AP84243 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
H3F3AP84243 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
H3F3AP84243 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
H3F3AP84243 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
H3F3AP84243 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
H3F3AP84243 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
H3F3AP84243 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC13.53□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms