Protein–RNA interactions for Protein: P56159

GFRA1, GDNF family receptor alpha-1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA1P56159 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
GFRA1P56159 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
GFRA1P56159 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
GFRA1P56159 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC13.51□□□□□ -0.25
GFRA1P56159 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
GFRA1P56159 AC104640.1-201ENST00000562617 2109 ntBASIC13.51□□□□□ -0.25
GFRA1P56159 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
GFRA1P56159 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC13.5□□□□□ -0.25
GFRA1P56159 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
GFRA1P56159 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC13.5□□□□□ -0.25
GFRA1P56159 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
GFRA1P56159 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
GFRA1P56159 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
GFRA1P56159 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
GFRA1P56159 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
GFRA1P56159 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
GFRA1P56159 AC003102.2-201ENST00000589195 1469 ntBASIC13.5□□□□□ -0.25
GFRA1P56159 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
GFRA1P56159 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
GFRA1P56159 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
GFRA1P56159 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC13.5□□□□□ -0.25
GFRA1P56159 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC13.5□□□□□ -0.25
GFRA1P56159 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
GFRA1P56159 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC13.5□□□□□ -0.25
GFRA1P56159 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
GFRA1P56159 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC13.5□□□□□ -0.25
GFRA1P56159 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
GFRA1P56159 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC13.5□□□□□ -0.25
GFRA1P56159 MIR326-201ENST00000362220 95 ntBASIC13.5□□□□□ -0.25
GFRA1P56159 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
GFRA1P56159 AC079178.1-201ENST00000420915 656 ntBASIC13.5□□□□□ -0.25
GFRA1P56159 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
GFRA1P56159 AC007969.1-201ENST00000433675 447 ntBASIC13.5□□□□□ -0.25
GFRA1P56159 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
GFRA1P56159 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC13.5□□□□□ -0.25
GFRA1P56159 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
GFRA1P56159 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
GFRA1P56159 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
GFRA1P56159 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC13.5□□□□□ -0.25
GFRA1P56159 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC13.5□□□□□ -0.25
GFRA1P56159 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC13.5□□□□□ -0.25
GFRA1P56159 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC13.5□□□□□ -0.25
GFRA1P56159 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC13.5□□□□□ -0.25
GFRA1P56159 KLK3-211ENST00000597483 810 ntTSL 2 BASIC13.5□□□□□ -0.25
GFRA1P56159 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC13.5□□□□□ -0.25
GFRA1P56159 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
GFRA1P56159 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
GFRA1P56159 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC13.5□□□□□ -0.25
GFRA1P56159 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC13.5□□□□□ -0.25
GFRA1P56159 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
GFRA1P56159 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
GFRA1P56159 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
GFRA1P56159 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
GFRA1P56159 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
GFRA1P56159 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
GFRA1P56159 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
GFRA1P56159 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
GFRA1P56159 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
GFRA1P56159 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
GFRA1P56159 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC13.5□□□□□ -0.25
GFRA1P56159 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC13.5□□□□□ -0.25
GFRA1P56159 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC13.5□□□□□ -0.25
GFRA1P56159 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC13.5□□□□□ -0.25
GFRA1P56159 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC13.5□□□□□ -0.25
GFRA1P56159 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
GFRA1P56159 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
GFRA1P56159 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
GFRA1P56159 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
GFRA1P56159 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC13.49□□□□□ -0.25
GFRA1P56159 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC13.49□□□□□ -0.25
GFRA1P56159 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC13.49□□□□□ -0.25
GFRA1P56159 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC13.49□□□□□ -0.25
GFRA1P56159 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
GFRA1P56159 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC13.49□□□□□ -0.25
GFRA1P56159 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
GFRA1P56159 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC13.49□□□□□ -0.25
GFRA1P56159 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
GFRA1P56159 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC13.49□□□□□ -0.25
GFRA1P56159 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
GFRA1P56159 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
GFRA1P56159 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
GFRA1P56159 AC020910.5-201ENST00000623668 1865 ntBASIC13.49□□□□□ -0.25
GFRA1P56159 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
GFRA1P56159 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
GFRA1P56159 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
GFRA1P56159 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
GFRA1P56159 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
GFRA1P56159 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
GFRA1P56159 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
GFRA1P56159 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
GFRA1P56159 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
GFRA1P56159 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC13.49□□□□□ -0.25
GFRA1P56159 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC13.49□□□□□ -0.25
GFRA1P56159 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
GFRA1P56159 MTX1P1-201ENST00000440904 838 ntBASIC13.49□□□□□ -0.25
GFRA1P56159 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
GFRA1P56159 RPSAP36-202ENST00000494591 1261 ntBASIC13.49□□□□□ -0.25
GFRA1P56159 CDC23-208ENST00000505120 455 ntTSL 3 BASIC13.49□□□□□ -0.25
GFRA1P56159 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC13.49□□□□□ -0.25
GFRA1P56159 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC13.49□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 79.3 ms