Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
CTCFP49711 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
CTCFP49711 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC17.4■□□□□ 0.38
CTCFP49711 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC17.4■□□□□ 0.38
CTCFP49711 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
CTCFP49711 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
CTCFP49711 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CTCFP49711 LSM5-207ENST00000410044 687 ntTSL 3 BASIC17.4■□□□□ 0.38
CTCFP49711 KLHL7-204ENST00000410047 1233 ntTSL 5 BASIC17.4■□□□□ 0.38
CTCFP49711 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC17.4■□□□□ 0.38
CTCFP49711 CHTF8-204ENST00000518041 567 ntTSL 2 BASIC17.4■□□□□ 0.38
CTCFP49711 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC17.4■□□□□ 0.38
CTCFP49711 THY1-209ENST00000580275 578 ntTSL 3 BASIC17.4■□□□□ 0.38
CTCFP49711 NOP16-211ENST00000621444 954 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CTCFP49711 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
CTCFP49711 DNAJC10-211ENST00000640034 888 ntTSL 5 BASIC17.4■□□□□ 0.38
CTCFP49711 CD79B-201ENST00000006750 1269 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CTCFP49711 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
CTCFP49711 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC17.4■□□□□ 0.38
CTCFP49711 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CTCFP49711 BANP-201ENST00000286122 2368 ntTSL 5 BASIC17.4■□□□□ 0.38
CTCFP49711 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC17.4■□□□□ 0.38
CTCFP49711 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CTCFP49711 F10-201ENST00000375551 1509 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CTCFP49711 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC17.4■□□□□ 0.38
CTCFP49711 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CTCFP49711 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CTCFP49711 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC17.4■□□□□ 0.38
CTCFP49711 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
CTCFP49711 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CTCFP49711 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
CTCFP49711 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
CTCFP49711 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CTCFP49711 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC17.39■□□□□ 0.37
CTCFP49711 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CTCFP49711 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC17.39■□□□□ 0.37
CTCFP49711 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CTCFP49711 AURKB-201ENST00000316199 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CTCFP49711 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CTCFP49711 VCX3A-202ENST00000398729 808 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
CTCFP49711 AC114812.1-201ENST00000421868 689 ntTSL 2 BASIC17.39■□□□□ 0.37
CTCFP49711 AL391832.2-203ENST00000423175 554 ntTSL 3 BASIC17.39■□□□□ 0.37
CTCFP49711 AC004895.1-203ENST00000428901 540 ntTSL 4 BASIC17.39■□□□□ 0.37
CTCFP49711 LINC01875-201ENST00000454477 660 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CTCFP49711 AC023906.1-201ENST00000486386 453 ntBASIC17.39■□□□□ 0.37
CTCFP49711 TUBB3-208ENST00000555576 572 ntTSL 4 BASIC17.39■□□□□ 0.37
CTCFP49711 AC015712.5-201ENST00000558568 564 ntTSL 2 BASIC17.39■□□□□ 0.37
CTCFP49711 DUX4L46-201ENST00000566845 751 ntBASIC17.39■□□□□ 0.37
CTCFP49711 PHBP15-201ENST00000574228 665 ntBASIC17.39■□□□□ 0.37
CTCFP49711 MIR4683-201ENST00000579659 81 ntBASIC17.39■□□□□ 0.37
CTCFP49711 AL358472.3-201ENST00000608147 415 ntBASIC17.39■□□□□ 0.37
CTCFP49711 AC084781.1-201ENST00000613737 656 ntBASIC17.39■□□□□ 0.37
CTCFP49711 AP001184.1-201ENST00000637936 376 ntBASIC17.39■□□□□ 0.37
CTCFP49711 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC17.39■□□□□ 0.37
CTCFP49711 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CTCFP49711 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
CTCFP49711 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CTCFP49711 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
CTCFP49711 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CTCFP49711 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CTCFP49711 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CTCFP49711 AMT-224ENST00000635808 1610 ntTSL 5 BASIC17.39■□□□□ 0.37
CTCFP49711 SERPINB6-206ENST00000380546 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CTCFP49711 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC17.39■□□□□ 0.37
CTCFP49711 ALOX12P2-203ENST00000570921 1945 ntBASIC17.39■□□□□ 0.37
CTCFP49711 AC005052.1-201ENST00000625181 2492 ntBASIC17.39■□□□□ 0.37
CTCFP49711 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CTCFP49711 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC17.38■□□□□ 0.37
CTCFP49711 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CTCFP49711 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC17.38■□□□□ 0.37
CTCFP49711 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
CTCFP49711 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC17.38■□□□□ 0.37
CTCFP49711 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
CTCFP49711 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
CTCFP49711 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CTCFP49711 AL592424.1-201ENST00000563624 1536 ntBASIC17.38■□□□□ 0.37
CTCFP49711 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
CTCFP49711 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CTCFP49711 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC17.38■□□□□ 0.37
CTCFP49711 JPT2-203ENST00000382711 894 ntTSL 4 BASIC17.38■□□□□ 0.37
CTCFP49711 PLA2G2A-202ENST00000400520 974 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CTCFP49711 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CTCFP49711 HMGB3-204ENST00000448905 812 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CTCFP49711 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC17.38■□□□□ 0.37
CTCFP49711 NDUFA3-214ENST00000485876 963 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CTCFP49711 ROPN1B-203ENST00000505382 713 ntTSL 2 BASIC17.38■□□□□ 0.37
CTCFP49711 AL121796.1-201ENST00000505702 466 ntTSL 3 BASIC17.38■□□□□ 0.37
CTCFP49711 AC007656.1-201ENST00000552238 573 ntTSL 4 BASIC17.38■□□□□ 0.37
CTCFP49711 IGHV3OR15-7-201ENST00000558565 359 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
CTCFP49711 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CTCFP49711 OCEL1-206ENST00000597836 1044 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
CTCFP49711 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC17.38■□□□□ 0.37
CTCFP49711 MEG3_2.1-201ENST00000611456 105 ntBASIC17.38■□□□□ 0.37
CTCFP49711 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC17.38■□□□□ 0.37
CTCFP49711 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
CTCFP49711 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
CTCFP49711 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CTCFP49711 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CTCFP49711 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CTCFP49711 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms