Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC14.74□□□□□ -0.05
HNF4AP41235 NUS1P3-201ENST00000423502 862 ntBASIC14.74□□□□□ -0.05
HNF4AP41235 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC14.74□□□□□ -0.05
HNF4AP41235 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC14.74□□□□□ -0.05
HNF4AP41235 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC14.74□□□□□ -0.05
HNF4AP41235 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC14.74□□□□□ -0.05
HNF4AP41235 WASH4P-201ENST00000564273 1246 ntBASIC14.74□□□□□ -0.05
HNF4AP41235 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC14.74□□□□□ -0.05
HNF4AP41235 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HNF4AP41235 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC14.74□□□□□ -0.05
HNF4AP41235 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC14.74□□□□□ -0.05
HNF4AP41235 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC14.74□□□□□ -0.05
HNF4AP41235 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
HNF4AP41235 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
HNF4AP41235 SLC9A7P1-202ENST00000556476 2239 ntBASIC14.74□□□□□ -0.05
HNF4AP41235 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
HNF4AP41235 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HNF4AP41235 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HNF4AP41235 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HNF4AP41235 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HNF4AP41235 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
HNF4AP41235 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HNF4AP41235 R3HDM2P2-201ENST00000401880 2116 ntBASIC14.74□□□□□ -0.05
HNF4AP41235 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
HNF4AP41235 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HNF4AP41235 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HNF4AP41235 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HNF4AP41235 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
HNF4AP41235 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HNF4AP41235 AL390755.1-201ENST00000623716 2027 ntBASIC14.73□□□□□ -0.05
HNF4AP41235 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HNF4AP41235 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
HNF4AP41235 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HNF4AP41235 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
HNF4AP41235 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC14.73□□□□□ -0.05
HNF4AP41235 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HNF4AP41235 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
HNF4AP41235 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC14.73□□□□□ -0.05
HNF4AP41235 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
HNF4AP41235 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HNF4AP41235 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HNF4AP41235 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
HNF4AP41235 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC14.73□□□□□ -0.05
HNF4AP41235 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC14.73□□□□□ -0.05
HNF4AP41235 GALT-202ENST00000450095 1280 ntTSL 2 BASIC14.73□□□□□ -0.05
HNF4AP41235 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC14.73□□□□□ -0.05
HNF4AP41235 AC140912.1-201ENST00000577171 1054 ntBASIC14.73□□□□□ -0.05
HNF4AP41235 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC14.73□□□□□ -0.05
HNF4AP41235 MIR3197-201ENST00000582241 73 ntBASIC14.73□□□□□ -0.05
HNF4AP41235 CTBP2P3-201ENST00000585629 1255 ntBASIC14.73□□□□□ -0.05
HNF4AP41235 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC14.73□□□□□ -0.05
HNF4AP41235 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
HNF4AP41235 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
HNF4AP41235 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
HNF4AP41235 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC14.73□□□□□ -0.05
HNF4AP41235 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
HNF4AP41235 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC14.73□□□□□ -0.05
HNF4AP41235 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC14.73□□□□□ -0.05
HNF4AP41235 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HNF4AP41235 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
HNF4AP41235 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HNF4AP41235 AC007292.2-201ENST00000593524 1812 ntBASIC14.73□□□□□ -0.05
HNF4AP41235 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HNF4AP41235 AC023908.3-201ENST00000564211 3047 ntBASIC14.73□□□□□ -0.05
HNF4AP41235 ABR-205ENST00000544583 5595 ntTSL 2 BASIC14.73□□□□□ -0.05
HNF4AP41235 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
HNF4AP41235 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC14.73□□□□□ -0.05
HNF4AP41235 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HNF4AP41235 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
HNF4AP41235 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
HNF4AP41235 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
HNF4AP41235 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HNF4AP41235 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HNF4AP41235 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HNF4AP41235 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC14.72□□□□□ -0.05
HNF4AP41235 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
HNF4AP41235 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC14.72□□□□□ -0.05
HNF4AP41235 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
HNF4AP41235 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
HNF4AP41235 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
HNF4AP41235 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC14.72□□□□□ -0.05
HNF4AP41235 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HNF4AP41235 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HNF4AP41235 DGCR5-201ENST00000399539 862 ntBASIC14.72□□□□□ -0.05
HNF4AP41235 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC14.72□□□□□ -0.05
HNF4AP41235 AC134915.1-201ENST00000426461 574 ntBASIC14.72□□□□□ -0.05
HNF4AP41235 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC14.72□□□□□ -0.05
HNF4AP41235 CRB3P1-201ENST00000449338 276 ntBASIC14.72□□□□□ -0.05
HNF4AP41235 ELK1P1-201ENST00000485699 580 ntBASIC14.72□□□□□ -0.05
HNF4AP41235 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC14.72□□□□□ -0.05
HNF4AP41235 AC092552.1-201ENST00000547243 906 ntBASIC14.72□□□□□ -0.05
HNF4AP41235 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC14.72□□□□□ -0.05
HNF4AP41235 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC14.72□□□□□ -0.05
HNF4AP41235 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC14.72□□□□□ -0.05
HNF4AP41235 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
HNF4AP41235 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HNF4AP41235 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
HNF4AP41235 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HNF4AP41235 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HNF4AP41235 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC14.72□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms