Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.3
CIITAP33076 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
CIITAP33076 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
CIITAP33076 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CIITAP33076 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC16.95■□□□□ 0.3
CIITAP33076 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CIITAP33076 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC16.95■□□□□ 0.3
CIITAP33076 SALL4P5-201ENST00000419001 1760 ntBASIC16.95■□□□□ 0.3
CIITAP33076 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
CIITAP33076 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC16.95■□□□□ 0.3
CIITAP33076 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CIITAP33076 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
CIITAP33076 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CIITAP33076 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CIITAP33076 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
CIITAP33076 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CIITAP33076 AL355994.2-201ENST00000447882 704 ntBASIC16.95■□□□□ 0.3
CIITAP33076 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
CIITAP33076 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC16.95■□□□□ 0.3
CIITAP33076 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
CIITAP33076 AP006547.1-201ENST00000563435 692 ntBASIC16.95■□□□□ 0.3
CIITAP33076 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC16.95■□□□□ 0.3
CIITAP33076 BX088702.1-201ENST00000610784 235 ntBASIC16.95■□□□□ 0.3
CIITAP33076 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
CIITAP33076 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
CIITAP33076 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
CIITAP33076 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
CIITAP33076 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CIITAP33076 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CIITAP33076 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CIITAP33076 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC16.95■□□□□ 0.3
CIITAP33076 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CIITAP33076 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CIITAP33076 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
CIITAP33076 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
CIITAP33076 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
CIITAP33076 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CIITAP33076 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CIITAP33076 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CIITAP33076 LINC00554-201ENST00000564841 3011 ntBASIC16.94■□□□□ 0.3
CIITAP33076 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CIITAP33076 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC16.94■□□□□ 0.3
CIITAP33076 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC16.94■□□□□ 0.3
CIITAP33076 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
CIITAP33076 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC16.94■□□□□ 0.3
CIITAP33076 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CIITAP33076 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CIITAP33076 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
CIITAP33076 SLC9A7P1-201ENST00000554295 3311 ntBASIC16.94■□□□□ 0.3
CIITAP33076 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
CIITAP33076 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CIITAP33076 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CIITAP33076 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
CIITAP33076 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CIITAP33076 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
CIITAP33076 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC16.94■□□□□ 0.3
CIITAP33076 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC16.94■□□□□ 0.3
CIITAP33076 CDC23-208ENST00000505120 455 ntTSL 3 BASIC16.94■□□□□ 0.3
CIITAP33076 GCOM2-201ENST00000509133 1104 ntBASIC16.94■□□□□ 0.3
CIITAP33076 NCK2-206ENST00000522586 490 ntTSL 5 BASIC16.94■□□□□ 0.3
CIITAP33076 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC16.94■□□□□ 0.3
CIITAP33076 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC16.94■□□□□ 0.3
CIITAP33076 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC16.94■□□□□ 0.3
CIITAP33076 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC16.94■□□□□ 0.3
CIITAP33076 AC009542.2-202ENST00000619004 1067 ntBASIC16.94■□□□□ 0.3
CIITAP33076 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC16.94■□□□□ 0.3
CIITAP33076 AC068418.2-201ENST00000577309 3703 ntBASIC16.94■□□□□ 0.3
CIITAP33076 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CIITAP33076 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CIITAP33076 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CIITAP33076 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC16.94■□□□□ 0.3
CIITAP33076 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC16.94■□□□□ 0.3
CIITAP33076 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CIITAP33076 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC16.94■□□□□ 0.3
CIITAP33076 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
CIITAP33076 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CIITAP33076 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
CIITAP33076 AC018442.1-201ENST00000421439 2061 ntBASIC16.93■□□□□ 0.3
CIITAP33076 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CIITAP33076 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
CIITAP33076 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CIITAP33076 AL023775.1-201ENST00000454907 1746 ntBASIC16.93■□□□□ 0.3
CIITAP33076 CASK-202ENST00000378158 3848 ntTSL 5 BASIC16.93■□□□□ 0.3
CIITAP33076 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
CIITAP33076 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
CIITAP33076 BANP-201ENST00000286122 2368 ntTSL 5 BASIC16.93■□□□□ 0.3
CIITAP33076 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CIITAP33076 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
CIITAP33076 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CIITAP33076 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CIITAP33076 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC16.93■□□□□ 0.3
CIITAP33076 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
CIITAP33076 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
CIITAP33076 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC16.93■□□□□ 0.3
CIITAP33076 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CIITAP33076 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CIITAP33076 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CIITAP33076 AC007274.1-201ENST00000439805 662 ntBASIC16.93■□□□□ 0.3
CIITAP33076 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC16.93■□□□□ 0.3
CIITAP33076 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 64 ms