Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
HLA-DMBP28068 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
HLA-DMBP28068 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
HLA-DMBP28068 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC11.6□□□□□ -0.55
HLA-DMBP28068 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC11.6□□□□□ -0.55
HLA-DMBP28068 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC11.6□□□□□ -0.55
HLA-DMBP28068 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
HLA-DMBP28068 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
HLA-DMBP28068 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC11.6□□□□□ -0.55
HLA-DMBP28068 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
HLA-DMBP28068 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
HLA-DMBP28068 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
HLA-DMBP28068 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
HLA-DMBP28068 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC11.6□□□□□ -0.55
HLA-DMBP28068 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC11.6□□□□□ -0.55
HLA-DMBP28068 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
HLA-DMBP28068 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
HLA-DMBP28068 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
HLA-DMBP28068 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC11.6□□□□□ -0.55
HLA-DMBP28068 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC11.6□□□□□ -0.55
HLA-DMBP28068 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
HLA-DMBP28068 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
HLA-DMBP28068 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
HLA-DMBP28068 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
HLA-DMBP28068 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC11.6□□□□□ -0.55
HLA-DMBP28068 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
HLA-DMBP28068 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
HLA-DMBP28068 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC11.6□□□□□ -0.55
HLA-DMBP28068 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC11.6□□□□□ -0.55
HLA-DMBP28068 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC11.6□□□□□ -0.55
HLA-DMBP28068 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC11.6□□□□□ -0.55
HLA-DMBP28068 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC11.6□□□□□ -0.55
HLA-DMBP28068 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
HLA-DMBP28068 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC11.6□□□□□ -0.55
HLA-DMBP28068 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
HLA-DMBP28068 CALY-203ENST00000368558 825 ntTSL 5 BASIC11.6□□□□□ -0.55
HLA-DMBP28068 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC11.6□□□□□ -0.55
HLA-DMBP28068 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC11.6□□□□□ -0.55
HLA-DMBP28068 HNRNPA3P1-201ENST00000401429 1139 ntBASIC11.6□□□□□ -0.55
HLA-DMBP28068 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC11.6□□□□□ -0.55
HLA-DMBP28068 TSPY16P-201ENST00000449843 468 ntBASIC11.6□□□□□ -0.55
HLA-DMBP28068 HNRNPA3P5-201ENST00000455201 833 ntBASIC11.6□□□□□ -0.55
HLA-DMBP28068 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
HLA-DMBP28068 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
HLA-DMBP28068 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
HLA-DMBP28068 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC11.6□□□□□ -0.55
HLA-DMBP28068 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC11.6□□□□□ -0.55
HLA-DMBP28068 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC11.6□□□□□ -0.55
HLA-DMBP28068 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC11.6□□□□□ -0.55
HLA-DMBP28068 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
HLA-DMBP28068 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC11.6□□□□□ -0.55
HLA-DMBP28068 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC11.6□□□□□ -0.55
HLA-DMBP28068 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC11.6□□□□□ -0.55
HLA-DMBP28068 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
HLA-DMBP28068 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC11.6□□□□□ -0.55
HLA-DMBP28068 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
HLA-DMBP28068 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
HLA-DMBP28068 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
HLA-DMBP28068 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
HLA-DMBP28068 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
HLA-DMBP28068 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
HLA-DMBP28068 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC11.6□□□□□ -0.55
HLA-DMBP28068 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
HLA-DMBP28068 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC11.6□□□□□ -0.55
HLA-DMBP28068 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
HLA-DMBP28068 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
HLA-DMBP28068 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
HLA-DMBP28068 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC11.6□□□□□ -0.55
HLA-DMBP28068 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
HLA-DMBP28068 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
HLA-DMBP28068 AP001267.2-201ENST00000532619 2086 ntBASIC11.59□□□□□ -0.55
HLA-DMBP28068 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC11.59□□□□□ -0.55
HLA-DMBP28068 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
HLA-DMBP28068 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC11.59□□□□□ -0.55
HLA-DMBP28068 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC11.59□□□□□ -0.55
HLA-DMBP28068 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
HLA-DMBP28068 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
HLA-DMBP28068 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC11.59□□□□□ -0.55
HLA-DMBP28068 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
HLA-DMBP28068 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
HLA-DMBP28068 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
HLA-DMBP28068 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
HLA-DMBP28068 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
HLA-DMBP28068 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC11.59□□□□□ -0.55
HLA-DMBP28068 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
HLA-DMBP28068 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC11.59□□□□□ -0.55
HLA-DMBP28068 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC11.59□□□□□ -0.55
HLA-DMBP28068 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
HLA-DMBP28068 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
HLA-DMBP28068 TOMM22P5-201ENST00000416399 439 ntBASIC11.59□□□□□ -0.55
HLA-DMBP28068 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC11.59□□□□□ -0.55
HLA-DMBP28068 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC11.59□□□□□ -0.55
HLA-DMBP28068 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
HLA-DMBP28068 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC11.59□□□□□ -0.55
HLA-DMBP28068 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC11.59□□□□□ -0.55
HLA-DMBP28068 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC11.59□□□□□ -0.55
HLA-DMBP28068 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC11.59□□□□□ -0.55
HLA-DMBP28068 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC11.59□□□□□ -0.55
HLA-DMBP28068 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
HLA-DMBP28068 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms