Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 IGHV3-72-202ENST00000621503 303 ntBASIC15.11■□□□□ 0.01
MSH3P20585 PRSS30P-206ENST00000641773 873 ntBASIC15.11■□□□□ 0.01
MSH3P20585 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
MSH3P20585 PES1-204ENST00000402284 2144 ntTSL 5 BASIC15.11■□□□□ 0.01
MSH3P20585 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
MSH3P20585 AC134312.5-201ENST00000568031 1313 ntBASIC15.11■□□□□ 0.01
MSH3P20585 AL360270.3-201ENST00000609118 1348 ntBASIC15.11■□□□□ 0.01
MSH3P20585 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
MSH3P20585 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
MSH3P20585 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
MSH3P20585 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
MSH3P20585 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
MSH3P20585 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
MSH3P20585 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC15.11■□□□□ 0.01
MSH3P20585 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC15.11■□□□□ 0.01
MSH3P20585 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC15.1■□□□□ 0.01
MSH3P20585 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
MSH3P20585 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MSH3P20585 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC15.1■□□□□ 0.01
MSH3P20585 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC15.1■□□□□ 0.01
MSH3P20585 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
MSH3P20585 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MSH3P20585 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC15.1■□□□□ 0.01
MSH3P20585 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
MSH3P20585 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
MSH3P20585 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
MSH3P20585 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC15.1■□□□□ 0.01
MSH3P20585 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
MSH3P20585 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MSH3P20585 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MSH3P20585 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC15.1■□□□□ 0.01
MSH3P20585 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MSH3P20585 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
MSH3P20585 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC15.1■□□□□ 0.01
MSH3P20585 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MSH3P20585 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MSH3P20585 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
MSH3P20585 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC15.1■□□□□ 0.01
MSH3P20585 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MSH3P20585 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
MSH3P20585 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
MSH3P20585 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC15.1■□□□□ 0.01
MSH3P20585 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MSH3P20585 BAATP1-201ENST00000412284 1225 ntBASIC15.1■□□□□ 0.01
MSH3P20585 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MSH3P20585 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
MSH3P20585 GIMAP3P-201ENST00000495150 836 ntBASIC15.1■□□□□ 0.01
MSH3P20585 AC022137.2-201ENST00000503482 481 ntBASIC15.1■□□□□ 0.01
MSH3P20585 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
MSH3P20585 AC068587.3-201ENST00000526613 355 ntBASIC15.1■□□□□ 0.01
MSH3P20585 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
MSH3P20585 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC15.1■□□□□ 0.01
MSH3P20585 LRRC59-203ENST00000576448 1531 ntBASIC15.1■□□□□ 0.01
MSH3P20585 CICP24-201ENST00000605464 2705 ntBASIC15.1■□□□□ 0.01
MSH3P20585 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MSH3P20585 KRT8P35-201ENST00000483942 1338 ntBASIC15.1■□□□□ 0.01
MSH3P20585 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC15.1■□□□□ 0.01
MSH3P20585 AC007292.2-201ENST00000593524 1812 ntBASIC15.1■□□□□ 0.01
MSH3P20585 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
MSH3P20585 REXO1L5P-201ENST00000622260 2098 ntBASIC15.1■□□□□ 0.01
MSH3P20585 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
MSH3P20585 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC15.1■□□□□ 0.01
MSH3P20585 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
MSH3P20585 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
MSH3P20585 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MSH3P20585 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
MSH3P20585 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MSH3P20585 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC15.1■□□□□ 0.01
MSH3P20585 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
MSH3P20585 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
MSH3P20585 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC15.09■□□□□ 0.01
MSH3P20585 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
MSH3P20585 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
MSH3P20585 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
MSH3P20585 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
MSH3P20585 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
MSH3P20585 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
MSH3P20585 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC15.09■□□□□ 0.01
MSH3P20585 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
MSH3P20585 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
MSH3P20585 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC15.09■□□□□ 0.01
MSH3P20585 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
MSH3P20585 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
MSH3P20585 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
MSH3P20585 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
MSH3P20585 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC15.09■□□□□ 0.01
MSH3P20585 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
MSH3P20585 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
MSH3P20585 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC15.09■□□□□ 0.01
MSH3P20585 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
MSH3P20585 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC15.09■□□□□ 0.01
MSH3P20585 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC15.09■□□□□ 0.01
MSH3P20585 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
MSH3P20585 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC15.09■□□□□ 0.01
MSH3P20585 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC15.09■□□□□ 0.01
MSH3P20585 GAPDHP21-201ENST00000450301 1010 ntBASIC15.09■□□□□ 0.01
MSH3P20585 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
MSH3P20585 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
MSH3P20585 RPSAP52-203ENST00000622976 1023 ntBASIC15.09■□□□□ 0.01
MSH3P20585 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms