Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
HMGA1P17096 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
HMGA1P17096 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
HMGA1P17096 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
HMGA1P17096 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
HMGA1P17096 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
HMGA1P17096 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HMGA1P17096 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
HMGA1P17096 FAM90A7P-201ENST00000382628 1395 ntBASIC15.5■□□□□ 0.07
HMGA1P17096 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
HMGA1P17096 FAM90A23P-201ENST00000400136 1395 ntBASIC15.5■□□□□ 0.07
HMGA1P17096 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
HMGA1P17096 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC15.5■□□□□ 0.07
HMGA1P17096 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC15.5■□□□□ 0.07
HMGA1P17096 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC15.5■□□□□ 0.07
HMGA1P17096 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC15.5■□□□□ 0.07
HMGA1P17096 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC15.5■□□□□ 0.07
HMGA1P17096 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC15.5■□□□□ 0.07
HMGA1P17096 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC15.5■□□□□ 0.07
HMGA1P17096 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
HMGA1P17096 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC15.5■□□□□ 0.07
HMGA1P17096 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HMGA1P17096 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
HMGA1P17096 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
HMGA1P17096 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
HMGA1P17096 SLC16A6P1-201ENST00000413214 1059 ntBASIC15.5■□□□□ 0.07
HMGA1P17096 ACTG1P2-201ENST00000415776 1125 ntBASIC15.5■□□□□ 0.07
HMGA1P17096 ACTG1P11-201ENST00000425411 1125 ntBASIC15.5■□□□□ 0.07
HMGA1P17096 AL157407.1-201ENST00000435784 904 ntBASIC15.5■□□□□ 0.07
HMGA1P17096 AC125604.1-201ENST00000496255 707 ntBASIC15.5■□□□□ 0.07
HMGA1P17096 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC15.5■□□□□ 0.07
HMGA1P17096 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
HMGA1P17096 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC15.5■□□□□ 0.07
HMGA1P17096 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC15.5■□□□□ 0.07
HMGA1P17096 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC15.5■□□□□ 0.07
HMGA1P17096 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HMGA1P17096 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC15.5■□□□□ 0.07
HMGA1P17096 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HMGA1P17096 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HMGA1P17096 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HMGA1P17096 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
HMGA1P17096 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC15.5■□□□□ 0.07
HMGA1P17096 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HMGA1P17096 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
HMGA1P17096 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HMGA1P17096 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HMGA1P17096 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HMGA1P17096 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
HMGA1P17096 CICP23-201ENST00000605013 2741 ntBASIC15.5■□□□□ 0.07
HMGA1P17096 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
HMGA1P17096 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
HMGA1P17096 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
HMGA1P17096 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
HMGA1P17096 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
HMGA1P17096 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
HMGA1P17096 AC008132.1-202ENST00000342005 1389 ntBASIC15.49■□□□□ 0.07
HMGA1P17096 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HMGA1P17096 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
HMGA1P17096 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC15.49■□□□□ 0.07
HMGA1P17096 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
HMGA1P17096 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HMGA1P17096 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HMGA1P17096 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
HMGA1P17096 SF1-209ENST00000433274 2317 ntTSL 2 BASIC15.49■□□□□ 0.07
HMGA1P17096 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC15.49■□□□□ 0.07
HMGA1P17096 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
HMGA1P17096 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC15.49■□□□□ 0.07
HMGA1P17096 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
HMGA1P17096 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HMGA1P17096 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
HMGA1P17096 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC15.49■□□□□ 0.07
HMGA1P17096 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HMGA1P17096 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HMGA1P17096 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
HMGA1P17096 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HMGA1P17096 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
HMGA1P17096 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
HMGA1P17096 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HMGA1P17096 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC15.49■□□□□ 0.07
HMGA1P17096 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC15.49■□□□□ 0.07
HMGA1P17096 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
HMGA1P17096 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC15.49■□□□□ 0.07
HMGA1P17096 SCARNA21-201ENST00000517026 139 ntBASIC15.49■□□□□ 0.07
HMGA1P17096 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
HMGA1P17096 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC15.49■□□□□ 0.07
HMGA1P17096 RERG-205ENST00000537647 935 ntTSL 2 BASIC15.49■□□□□ 0.07
HMGA1P17096 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC15.49■□□□□ 0.07
HMGA1P17096 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC15.49■□□□□ 0.07
HMGA1P17096 AC005962.1-201ENST00000584100 773 ntBASIC15.49■□□□□ 0.07
HMGA1P17096 AL132994.2-201ENST00000603120 687 ntBASIC15.49■□□□□ 0.07
HMGA1P17096 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HMGA1P17096 AL136295.7-201ENST00000619226 1200 ntBASIC15.49■□□□□ 0.07
HMGA1P17096 RPL35-206ENST00000629845 340 ntTSL 5 BASIC15.49■□□□□ 0.07
HMGA1P17096 AL805961.1-203ENST00000641078 1258 ntBASIC15.49■□□□□ 0.07
HMGA1P17096 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
HMGA1P17096 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC15.49■□□□□ 0.07
HMGA1P17096 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HMGA1P17096 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HMGA1P17096 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC15.49■□□□□ 0.07
HMGA1P17096 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 117.7 ms