Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC11.44□□□□□ -0.58
COL6A5A8TX70 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
COL6A5A8TX70 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC11.44□□□□□ -0.58
COL6A5A8TX70 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
COL6A5A8TX70 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC11.44□□□□□ -0.58
COL6A5A8TX70 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC11.44□□□□□ -0.58
COL6A5A8TX70 FUCA1P1-201ENST00000374476 1351 ntBASIC11.44□□□□□ -0.58
COL6A5A8TX70 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
COL6A5A8TX70 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
COL6A5A8TX70 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC11.43□□□□□ -0.58
COL6A5A8TX70 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
COL6A5A8TX70 ZDHHC6-201ENST00000369404 1721 ntAPPRIS ALT1 TSL 1 (best) BASIC11.43□□□□□ -0.58
COL6A5A8TX70 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
COL6A5A8TX70 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
COL6A5A8TX70 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC11.43□□□□□ -0.58
COL6A5A8TX70 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
COL6A5A8TX70 TNNT1-202ENST00000356783 934 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
COL6A5A8TX70 LINC01983-201ENST00000413586 574 ntTSL 2 BASIC11.43□□□□□ -0.58
COL6A5A8TX70 AC106869.1-201ENST00000448713 577 ntTSL 4 BASIC11.43□□□□□ -0.58
COL6A5A8TX70 AC111149.2-202ENST00000518355 599 ntTSL 4 BASIC11.43□□□□□ -0.58
COL6A5A8TX70 AP003351.1-201ENST00000522743 668 ntTSL 3 BASIC11.43□□□□□ -0.58
COL6A5A8TX70 COX5A-205ENST00000568517 582 ntTSL 3 BASIC11.43□□□□□ -0.58
COL6A5A8TX70 AC023421.2-201ENST00000589510 313 ntTSL 5 BASIC11.43□□□□□ -0.58
COL6A5A8TX70 ZNF737-204ENST00000596797 569 ntTSL 4 BASIC11.43□□□□□ -0.58
COL6A5A8TX70 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC11.43□□□□□ -0.58
COL6A5A8TX70 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC11.43□□□□□ -0.58
COL6A5A8TX70 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
COL6A5A8TX70 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
COL6A5A8TX70 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
COL6A5A8TX70 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC11.43□□□□□ -0.58
COL6A5A8TX70 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC11.43□□□□□ -0.58
COL6A5A8TX70 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
COL6A5A8TX70 FAS-202ENST00000352159 1722 ntTSL 5 BASIC11.43□□□□□ -0.58
COL6A5A8TX70 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC11.43□□□□□ -0.58
COL6A5A8TX70 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC11.43□□□□□ -0.58
COL6A5A8TX70 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
COL6A5A8TX70 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
COL6A5A8TX70 KRT18P4-201ENST00000422599 1288 ntBASIC11.43□□□□□ -0.58
COL6A5A8TX70 AC068057.1-201ENST00000453322 709 ntTSL 2 BASIC11.43□□□□□ -0.58
COL6A5A8TX70 RN7SL147P-201ENST00000487345 298 ntBASIC11.43□□□□□ -0.58
COL6A5A8TX70 AC022447.5-201ENST00000504817 392 ntBASIC11.43□□□□□ -0.58
COL6A5A8TX70 POLR3G-207ENST00000514483 682 ntTSL 3 BASIC11.43□□□□□ -0.58
COL6A5A8TX70 AC073569.2-201ENST00000551995 354 ntTSL 5 BASIC11.43□□□□□ -0.58
COL6A5A8TX70 AC079414.2-201ENST00000567157 1104 ntBASIC11.43□□□□□ -0.58
COL6A5A8TX70 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC11.43□□□□□ -0.58
COL6A5A8TX70 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
COL6A5A8TX70 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC11.43□□□□□ -0.58
COL6A5A8TX70 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
COL6A5A8TX70 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC11.43□□□□□ -0.58
COL6A5A8TX70 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
COL6A5A8TX70 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
COL6A5A8TX70 ANXA3-202ENST00000503570 1524 ntTSL 5 BASIC11.43□□□□□ -0.58
COL6A5A8TX70 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
COL6A5A8TX70 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
COL6A5A8TX70 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
COL6A5A8TX70 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC11.43□□□□□ -0.58
COL6A5A8TX70 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC11.43□□□□□ -0.58
COL6A5A8TX70 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
COL6A5A8TX70 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC11.43□□□□□ -0.58
COL6A5A8TX70 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
COL6A5A8TX70 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC11.43□□□□□ -0.58
COL6A5A8TX70 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC11.43□□□□□ -0.58
COL6A5A8TX70 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
COL6A5A8TX70 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
COL6A5A8TX70 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
COL6A5A8TX70 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC11.42□□□□□ -0.58
COL6A5A8TX70 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
COL6A5A8TX70 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
COL6A5A8TX70 TNNT2-207ENST00000367322 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
COL6A5A8TX70 SFMBT2-202ENST00000379711 692 ntTSL 5 BASIC11.42□□□□□ -0.58
COL6A5A8TX70 OR2R1P-201ENST00000441404 914 ntBASIC11.42□□□□□ -0.58
COL6A5A8TX70 UBR5-AS1-202ENST00000520820 800 ntTSL 2 BASIC11.42□□□□□ -0.58
COL6A5A8TX70 AC008750.2-201ENST00000526996 627 ntTSL 3 BASIC11.42□□□□□ -0.58
COL6A5A8TX70 GLT8D2-204ENST00000547583 862 ntTSL 5 BASIC11.42□□□□□ -0.58
COL6A5A8TX70 AC091304.3-201ENST00000566500 716 ntBASIC11.42□□□□□ -0.58
COL6A5A8TX70 ANAPC11-214ENST00000578544 403 ntTSL 3 BASIC11.42□□□□□ -0.58
COL6A5A8TX70 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC11.42□□□□□ -0.58
COL6A5A8TX70 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
COL6A5A8TX70 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC11.42□□□□□ -0.58
COL6A5A8TX70 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC11.42□□□□□ -0.58
COL6A5A8TX70 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
COL6A5A8TX70 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC11.42□□□□□ -0.58
COL6A5A8TX70 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
COL6A5A8TX70 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
COL6A5A8TX70 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC11.42□□□□□ -0.58
COL6A5A8TX70 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
COL6A5A8TX70 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
COL6A5A8TX70 TRMT11-202ENST00000368332 1889 ntAPPRIS ALT1 TSL 2 BASIC11.42□□□□□ -0.58
COL6A5A8TX70 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC11.42□□□□□ -0.58
COL6A5A8TX70 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
COL6A5A8TX70 AC062028.1-201ENST00000536743 1422 ntTSL 5 BASIC11.42□□□□□ -0.58
COL6A5A8TX70 F11R-206ENST00000621309 4770 ntTSL 5 BASIC11.42□□□□□ -0.58
COL6A5A8TX70 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC11.42□□□□□ -0.58
COL6A5A8TX70 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
COL6A5A8TX70 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC11.42□□□□□ -0.58
COL6A5A8TX70 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC11.42□□□□□ -0.58
COL6A5A8TX70 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC11.42□□□□□ -0.58
COL6A5A8TX70 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
COL6A5A8TX70 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC11.42□□□□□ -0.58
COL6A5A8TX70 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms