Protein–RNA interactions for Protein: Q9NXS3

KLHL28, Kelch-like protein 28, humanhuman

Predictions only

Length 571 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KLHL28Q9NXS3 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
KLHL28Q9NXS3 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
KLHL28Q9NXS3 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
KLHL28Q9NXS3 INTS4P1-203ENST00000641008 3683 ntBASIC14.23□□□□□ -0.13
KLHL28Q9NXS3 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
KLHL28Q9NXS3 LANCL3-202ENST00000378621 10298 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
KLHL28Q9NXS3 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC14.23□□□□□ -0.13
KLHL28Q9NXS3 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
KLHL28Q9NXS3 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC14.23□□□□□ -0.13
KLHL28Q9NXS3 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
KLHL28Q9NXS3 AMT-204ENST00000427987 1646 ntTSL 5 BASIC14.23□□□□□ -0.13
KLHL28Q9NXS3 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
KLHL28Q9NXS3 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC14.23□□□□□ -0.13
KLHL28Q9NXS3 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC14.23□□□□□ -0.13
KLHL28Q9NXS3 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
KLHL28Q9NXS3 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
KLHL28Q9NXS3 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
KLHL28Q9NXS3 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
KLHL28Q9NXS3 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
KLHL28Q9NXS3 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC14.23□□□□□ -0.13
KLHL28Q9NXS3 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
KLHL28Q9NXS3 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC14.23□□□□□ -0.13
KLHL28Q9NXS3 PKIG-203ENST00000372887 769 ntTSL 3 BASIC14.23□□□□□ -0.13
KLHL28Q9NXS3 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
KLHL28Q9NXS3 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC14.23□□□□□ -0.13
KLHL28Q9NXS3 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC14.23□□□□□ -0.13
KLHL28Q9NXS3 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
KLHL28Q9NXS3 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC14.23□□□□□ -0.13
KLHL28Q9NXS3 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
KLHL28Q9NXS3 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC14.23□□□□□ -0.13
KLHL28Q9NXS3 AC244107.1-201ENST00000442033 332 ntBASIC14.23□□□□□ -0.13
KLHL28Q9NXS3 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC14.23□□□□□ -0.13
KLHL28Q9NXS3 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
KLHL28Q9NXS3 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
KLHL28Q9NXS3 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
KLHL28Q9NXS3 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC14.23□□□□□ -0.13
KLHL28Q9NXS3 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC14.23□□□□□ -0.13
KLHL28Q9NXS3 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
KLHL28Q9NXS3 AC008738.7-201ENST00000609744 511 ntBASIC14.23□□□□□ -0.13
KLHL28Q9NXS3 GPR39-203ENST00000622084 900 ntTSL 5 BASIC14.23□□□□□ -0.13
KLHL28Q9NXS3 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC14.23□□□□□ -0.13
KLHL28Q9NXS3 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
KLHL28Q9NXS3 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
KLHL28Q9NXS3 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
KLHL28Q9NXS3 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
KLHL28Q9NXS3 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
KLHL28Q9NXS3 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
KLHL28Q9NXS3 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
KLHL28Q9NXS3 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
KLHL28Q9NXS3 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC14.23□□□□□ -0.13
KLHL28Q9NXS3 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
KLHL28Q9NXS3 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC14.23□□□□□ -0.13
KLHL28Q9NXS3 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
KLHL28Q9NXS3 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
KLHL28Q9NXS3 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
KLHL28Q9NXS3 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC14.22□□□□□ -0.13
KLHL28Q9NXS3 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
KLHL28Q9NXS3 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC14.22□□□□□ -0.13
KLHL28Q9NXS3 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
KLHL28Q9NXS3 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
KLHL28Q9NXS3 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC14.22□□□□□ -0.13
KLHL28Q9NXS3 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
KLHL28Q9NXS3 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
KLHL28Q9NXS3 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
KLHL28Q9NXS3 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
KLHL28Q9NXS3 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
KLHL28Q9NXS3 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
KLHL28Q9NXS3 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
KLHL28Q9NXS3 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
KLHL28Q9NXS3 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
KLHL28Q9NXS3 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC14.22□□□□□ -0.13
KLHL28Q9NXS3 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
KLHL28Q9NXS3 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC14.22□□□□□ -0.13
KLHL28Q9NXS3 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC14.22□□□□□ -0.13
KLHL28Q9NXS3 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC14.22□□□□□ -0.13
KLHL28Q9NXS3 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC14.22□□□□□ -0.13
KLHL28Q9NXS3 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
KLHL28Q9NXS3 AC009477.1-201ENST00000452936 217 ntBASIC14.22□□□□□ -0.13
KLHL28Q9NXS3 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC14.22□□□□□ -0.13
KLHL28Q9NXS3 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC14.22□□□□□ -0.13
KLHL28Q9NXS3 REEP4-207ENST00000523293 913 ntTSL 3 BASIC14.22□□□□□ -0.13
KLHL28Q9NXS3 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC14.22□□□□□ -0.13
KLHL28Q9NXS3 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC14.22□□□□□ -0.13
KLHL28Q9NXS3 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC14.22□□□□□ -0.13
KLHL28Q9NXS3 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
KLHL28Q9NXS3 AC009407.1-201ENST00000568958 598 ntBASIC14.22□□□□□ -0.13
KLHL28Q9NXS3 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC14.22□□□□□ -0.13
KLHL28Q9NXS3 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC14.22□□□□□ -0.13
KLHL28Q9NXS3 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC14.22□□□□□ -0.13
KLHL28Q9NXS3 AL844908.2-201ENST00000609461 460 ntBASIC14.22□□□□□ -0.13
KLHL28Q9NXS3 AL662799.1-202ENST00000614205 422 ntBASIC14.22□□□□□ -0.13
KLHL28Q9NXS3 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC14.22□□□□□ -0.13
KLHL28Q9NXS3 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
KLHL28Q9NXS3 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
KLHL28Q9NXS3 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
KLHL28Q9NXS3 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
KLHL28Q9NXS3 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC14.22□□□□□ -0.13
KLHL28Q9NXS3 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
KLHL28Q9NXS3 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
KLHL28Q9NXS3 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms