Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC15.16■□□□□ 0.02
TM9SF3Q9HD45 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TM9SF3Q9HD45 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC15.16■□□□□ 0.02
TM9SF3Q9HD45 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
TM9SF3Q9HD45 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
TM9SF3Q9HD45 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
TM9SF3Q9HD45 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
TM9SF3Q9HD45 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TM9SF3Q9HD45 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TM9SF3Q9HD45 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
TM9SF3Q9HD45 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 AC138028.6-201ENST00000616106 1482 ntBASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 SNX21-203ENST00000372541 771 ntTSL 2 BASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 HNRNPA1P32-201ENST00000396326 963 ntBASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 MIR663B-201ENST00000408361 115 ntBASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 AC004945.1-201ENST00000416738 983 ntBASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 PTPA-218ENST00000435132 618 ntTSL 2 BASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 RHOQP1-201ENST00000555758 579 ntBASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 ACTG1P17-201ENST00000558391 1119 ntBASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 AC020914.3-201ENST00000594712 304 ntBASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 AL021578.1-201ENST00000613646 709 ntBASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 TKT-202ENST00000423516 2075 ntTSL 2 BASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 FLJ16779-201ENST00000612722 7638 ntBASIC15.15■□□□□ 0.02
TM9SF3Q9HD45 AL023775.1-201ENST00000454907 1746 ntBASIC15.14■□□□□ 0.01
TM9SF3Q9HD45 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TM9SF3Q9HD45 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
TM9SF3Q9HD45 AL158070.2-201ENST00000623713 1621 ntBASIC15.14■□□□□ 0.01
TM9SF3Q9HD45 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
TM9SF3Q9HD45 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TM9SF3Q9HD45 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TM9SF3Q9HD45 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC15.14■□□□□ 0.01
TM9SF3Q9HD45 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
TM9SF3Q9HD45 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TM9SF3Q9HD45 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC15.14■□□□□ 0.01
TM9SF3Q9HD45 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
TM9SF3Q9HD45 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TM9SF3Q9HD45 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TM9SF3Q9HD45 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TM9SF3Q9HD45 AC018735.1-201ENST00000437208 1502 ntBASIC15.14■□□□□ 0.01
TM9SF3Q9HD45 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TM9SF3Q9HD45 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC15.14■□□□□ 0.01
TM9SF3Q9HD45 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC15.14■□□□□ 0.01
TM9SF3Q9HD45 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TM9SF3Q9HD45 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TM9SF3Q9HD45 FNTAP2-201ENST00000430308 634 ntBASIC15.14■□□□□ 0.01
TM9SF3Q9HD45 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC15.14■□□□□ 0.01
TM9SF3Q9HD45 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC15.14■□□□□ 0.01
TM9SF3Q9HD45 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC15.14■□□□□ 0.01
TM9SF3Q9HD45 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
TM9SF3Q9HD45 NEU3-202ENST00000526068 431 ntTSL 2 BASIC15.14■□□□□ 0.01
TM9SF3Q9HD45 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
TM9SF3Q9HD45 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TM9SF3Q9HD45 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC15.14■□□□□ 0.01
TM9SF3Q9HD45 NAT9-222ENST00000583476 583 ntTSL 3 BASIC15.14■□□□□ 0.01
TM9SF3Q9HD45 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC15.14■□□□□ 0.01
TM9SF3Q9HD45 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TM9SF3Q9HD45 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms