Protein–RNA interactions for Protein: Q9BZI7

UPF3B, Regulator of nonsense transcripts 3B, humanhuman

Known RBP Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3BQ9BZI7 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
UPF3BQ9BZI7 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC18.12■□□□□ 0.49
UPF3BQ9BZI7 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
UPF3BQ9BZI7 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC18.12■□□□□ 0.49
UPF3BQ9BZI7 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
UPF3BQ9BZI7 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
UPF3BQ9BZI7 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
UPF3BQ9BZI7 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC18.12■□□□□ 0.49
UPF3BQ9BZI7 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
UPF3BQ9BZI7 INO80C-210ENST00000590757 595 ntTSL 2 BASIC18.12■□□□□ 0.49
UPF3BQ9BZI7 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
UPF3BQ9BZI7 AC093525.8-201ENST00000624099 1342 ntBASIC18.12■□□□□ 0.49
UPF3BQ9BZI7 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
UPF3BQ9BZI7 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
UPF3BQ9BZI7 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC18.12■□□□□ 0.49
UPF3BQ9BZI7 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
UPF3BQ9BZI7 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
UPF3BQ9BZI7 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
UPF3BQ9BZI7 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
UPF3BQ9BZI7 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
UPF3BQ9BZI7 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC18.12■□□□□ 0.49
UPF3BQ9BZI7 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
UPF3BQ9BZI7 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
UPF3BQ9BZI7 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC18.12■□□□□ 0.49
UPF3BQ9BZI7 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC18.12■□□□□ 0.49
UPF3BQ9BZI7 AC113367.3-201ENST00000508316 1912 ntBASIC18.11■□□□□ 0.49
UPF3BQ9BZI7 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
UPF3BQ9BZI7 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
UPF3BQ9BZI7 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
UPF3BQ9BZI7 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC18.11■□□□□ 0.49
UPF3BQ9BZI7 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
UPF3BQ9BZI7 ABR-228ENST00000574437 3196 ntTSL 5 BASIC18.11■□□□□ 0.49
UPF3BQ9BZI7 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
UPF3BQ9BZI7 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC18.11■□□□□ 0.49
UPF3BQ9BZI7 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
UPF3BQ9BZI7 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
UPF3BQ9BZI7 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
UPF3BQ9BZI7 GRAP-202ENST00000395635 834 ntTSL 2 BASIC18.11■□□□□ 0.49
UPF3BQ9BZI7 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
UPF3BQ9BZI7 AL353779.1-201ENST00000434793 351 ntBASIC18.11■□□□□ 0.49
UPF3BQ9BZI7 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC18.11■□□□□ 0.49
UPF3BQ9BZI7 UGT1A2P-201ENST00000454886 866 ntBASIC18.11■□□□□ 0.49
UPF3BQ9BZI7 RN7SL399P-201ENST00000471648 279 ntBASIC18.11■□□□□ 0.49
UPF3BQ9BZI7 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
UPF3BQ9BZI7 AC026410.3-201ENST00000514280 936 ntBASIC18.11■□□□□ 0.49
UPF3BQ9BZI7 REEP4-207ENST00000523293 913 ntTSL 3 BASIC18.11■□□□□ 0.49
UPF3BQ9BZI7 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC18.11■□□□□ 0.49
UPF3BQ9BZI7 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC18.11■□□□□ 0.49
UPF3BQ9BZI7 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC18.11■□□□□ 0.49
UPF3BQ9BZI7 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC18.11■□□□□ 0.49
UPF3BQ9BZI7 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
UPF3BQ9BZI7 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
UPF3BQ9BZI7 AL138799.1-201ENST00000448213 1675 ntBASIC18.11■□□□□ 0.49
UPF3BQ9BZI7 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC18.11■□□□□ 0.49
UPF3BQ9BZI7 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
UPF3BQ9BZI7 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
UPF3BQ9BZI7 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC18.11■□□□□ 0.49
UPF3BQ9BZI7 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
UPF3BQ9BZI7 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
UPF3BQ9BZI7 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
UPF3BQ9BZI7 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
UPF3BQ9BZI7 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
UPF3BQ9BZI7 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
UPF3BQ9BZI7 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
UPF3BQ9BZI7 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
UPF3BQ9BZI7 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
UPF3BQ9BZI7 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
UPF3BQ9BZI7 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
UPF3BQ9BZI7 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
UPF3BQ9BZI7 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
UPF3BQ9BZI7 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
UPF3BQ9BZI7 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC18.1■□□□□ 0.49
UPF3BQ9BZI7 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
UPF3BQ9BZI7 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC18.1■□□□□ 0.49
UPF3BQ9BZI7 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
UPF3BQ9BZI7 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
UPF3BQ9BZI7 BX640514.1-201ENST00000583223 1918 ntBASIC18.1■□□□□ 0.49
UPF3BQ9BZI7 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
UPF3BQ9BZI7 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC18.1■□□□□ 0.49
UPF3BQ9BZI7 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC18.1■□□□□ 0.49
UPF3BQ9BZI7 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
UPF3BQ9BZI7 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC18.1■□□□□ 0.49
UPF3BQ9BZI7 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
UPF3BQ9BZI7 RHOA-206ENST00000454011 889 ntTSL 2 BASIC18.1■□□□□ 0.49
UPF3BQ9BZI7 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC18.1■□□□□ 0.49
UPF3BQ9BZI7 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC18.1■□□□□ 0.49
UPF3BQ9BZI7 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC18.1■□□□□ 0.49
UPF3BQ9BZI7 MIR8072-201ENST00000614241 80 ntBASIC18.1■□□□□ 0.49
UPF3BQ9BZI7 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
UPF3BQ9BZI7 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
UPF3BQ9BZI7 AC008761.3-201ENST00000624803 892 ntBASIC18.1■□□□□ 0.49
UPF3BQ9BZI7 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC18.1■□□□□ 0.49
UPF3BQ9BZI7 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
UPF3BQ9BZI7 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC18.1■□□□□ 0.49
UPF3BQ9BZI7 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC18.1■□□□□ 0.49
UPF3BQ9BZI7 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
UPF3BQ9BZI7 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
UPF3BQ9BZI7 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC18.1■□□□□ 0.49
UPF3BQ9BZI7 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
UPF3BQ9BZI7 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 61.2 ms