Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 AL133338.1-201ENST00000565695 1517 ntBASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 AC015818.8-201ENST00000587907 1519 ntBASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRAIPQ9BWF2 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRAIPQ9BWF2 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC16.59■□□□□ 0.25
TRAIPQ9BWF2 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRAIPQ9BWF2 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRAIPQ9BWF2 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRAIPQ9BWF2 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC16.59■□□□□ 0.25
TRAIPQ9BWF2 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC16.59■□□□□ 0.25
TRAIPQ9BWF2 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TRAIPQ9BWF2 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRAIPQ9BWF2 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TRAIPQ9BWF2 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC16.59■□□□□ 0.25
TRAIPQ9BWF2 API5-202ENST00000420461 2009 ntTSL 2 BASIC16.59■□□□□ 0.25
TRAIPQ9BWF2 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
TRAIPQ9BWF2 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRAIPQ9BWF2 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRAIPQ9BWF2 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRAIPQ9BWF2 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TRAIPQ9BWF2 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
TRAIPQ9BWF2 POM121L8P-201ENST00000417732 1281 ntBASIC16.59■□□□□ 0.25
TRAIPQ9BWF2 POM121L9P-203ENST00000441984 1285 ntBASIC16.59■□□□□ 0.25
TRAIPQ9BWF2 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC16.59■□□□□ 0.25
TRAIPQ9BWF2 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRAIPQ9BWF2 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC16.59■□□□□ 0.25
TRAIPQ9BWF2 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC16.59■□□□□ 0.25
TRAIPQ9BWF2 DUX4L47-201ENST00000566374 394 ntBASIC16.59■□□□□ 0.25
TRAIPQ9BWF2 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRAIPQ9BWF2 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TRAIPQ9BWF2 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRAIPQ9BWF2 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRAIPQ9BWF2 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRAIPQ9BWF2 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRAIPQ9BWF2 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC16.59■□□□□ 0.25
TRAIPQ9BWF2 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
TRAIPQ9BWF2 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRAIPQ9BWF2 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRAIPQ9BWF2 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TRAIPQ9BWF2 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC16.59■□□□□ 0.25
TRAIPQ9BWF2 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC16.59■□□□□ 0.25
TRAIPQ9BWF2 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TRAIPQ9BWF2 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
TRAIPQ9BWF2 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC16.59■□□□□ 0.25
TRAIPQ9BWF2 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC16.58■□□□□ 0.25
TRAIPQ9BWF2 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
TRAIPQ9BWF2 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.25
TRAIPQ9BWF2 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.25
TRAIPQ9BWF2 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC16.58■□□□□ 0.25
TRAIPQ9BWF2 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC16.58■□□□□ 0.25
TRAIPQ9BWF2 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC16.58■□□□□ 0.25
TRAIPQ9BWF2 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
TRAIPQ9BWF2 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC16.58■□□□□ 0.25
TRAIPQ9BWF2 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
TRAIPQ9BWF2 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.25
TRAIPQ9BWF2 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
TRAIPQ9BWF2 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC16.58■□□□□ 0.25
TRAIPQ9BWF2 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TRAIPQ9BWF2 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC16.58■□□□□ 0.24
TRAIPQ9BWF2 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TRAIPQ9BWF2 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TRAIPQ9BWF2 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
TRAIPQ9BWF2 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TRAIPQ9BWF2 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
TRAIPQ9BWF2 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
TRAIPQ9BWF2 MIR1247-201ENST00000408206 136 ntBASIC16.58■□□□□ 0.24
TRAIPQ9BWF2 BTBD6P1-201ENST00000412176 1267 ntBASIC16.58■□□□□ 0.24
TRAIPQ9BWF2 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC16.58■□□□□ 0.24
TRAIPQ9BWF2 GPAA1P2-201ENST00000417923 928 ntBASIC16.58■□□□□ 0.24
TRAIPQ9BWF2 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC16.58■□□□□ 0.24
TRAIPQ9BWF2 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC16.58■□□□□ 0.24
TRAIPQ9BWF2 ZNF767P-206ENST00000513792 565 ntBASIC16.58■□□□□ 0.24
TRAIPQ9BWF2 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC16.58■□□□□ 0.24
TRAIPQ9BWF2 ACR-203ENST00000529621 708 ntTSL 5 BASIC16.58■□□□□ 0.24
TRAIPQ9BWF2 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC16.58■□□□□ 0.24
TRAIPQ9BWF2 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
TRAIPQ9BWF2 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
TRAIPQ9BWF2 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
TRAIPQ9BWF2 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC16.58■□□□□ 0.24
TRAIPQ9BWF2 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC16.58■□□□□ 0.24
TRAIPQ9BWF2 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
TRAIPQ9BWF2 AC244093.1-201ENST00000610837 814 ntBASIC16.58■□□□□ 0.24
TRAIPQ9BWF2 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC16.58■□□□□ 0.24
TRAIPQ9BWF2 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
TRAIPQ9BWF2 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms