Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS13AQ96RL7 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
VPS13AQ96RL7 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
VPS13AQ96RL7 EIF4E2-205ENST00000409394 604 ntTSL 3 BASIC14.56□□□□□ -0.08
VPS13AQ96RL7 LINC00339-202ENST00000416769 1077 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
VPS13AQ96RL7 CSNK1G2P1-201ENST00000442675 955 ntBASIC14.56□□□□□ -0.08
VPS13AQ96RL7 KLF3-AS1-203ENST00000504219 627 ntTSL 3 BASIC14.56□□□□□ -0.08
VPS13AQ96RL7 AC138409.2-203ENST00000508395 553 ntTSL 4 BASIC14.56□□□□□ -0.08
VPS13AQ96RL7 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC14.56□□□□□ -0.08
VPS13AQ96RL7 AC002044.2-201ENST00000624910 970 ntBASIC14.56□□□□□ -0.08
VPS13AQ96RL7 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC14.56□□□□□ -0.08
VPS13AQ96RL7 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS13AQ96RL7 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC14.56□□□□□ -0.08
VPS13AQ96RL7 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC14.56□□□□□ -0.08
VPS13AQ96RL7 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS13AQ96RL7 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS13AQ96RL7 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
VPS13AQ96RL7 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS13AQ96RL7 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC14.56□□□□□ -0.08
VPS13AQ96RL7 RBM4B-201ENST00000310046 1840 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS13AQ96RL7 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
VPS13AQ96RL7 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC14.55□□□□□ -0.08
VPS13AQ96RL7 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS13AQ96RL7 RN7SKP230-201ENST00000365642 335 ntBASIC14.55□□□□□ -0.08
VPS13AQ96RL7 ANG-202ENST00000397990 742 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS13AQ96RL7 AF274858.1-201ENST00000406288 372 ntBASIC14.55□□□□□ -0.08
VPS13AQ96RL7 POLR3H-204ENST00000407461 802 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS13AQ96RL7 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
VPS13AQ96RL7 EFNA4-203ENST00000427683 1052 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
VPS13AQ96RL7 AC002127.2-201ENST00000444032 792 ntTSL 3 BASIC14.55□□□□□ -0.08
VPS13AQ96RL7 LINC01875-201ENST00000454477 660 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
VPS13AQ96RL7 BPIFB5P-201ENST00000457066 1099 ntBASIC14.55□□□□□ -0.08
VPS13AQ96RL7 RNA5SP417-201ENST00000516459 108 ntBASIC14.55□□□□□ -0.08
VPS13AQ96RL7 AL022334.2-201ENST00000610000 484 ntBASIC14.55□□□□□ -0.08
VPS13AQ96RL7 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS13AQ96RL7 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS13AQ96RL7 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS13AQ96RL7 WARS-232ENST00000556645 2508 ntTSL 5 BASIC14.55□□□□□ -0.08
VPS13AQ96RL7 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
VPS13AQ96RL7 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC14.55□□□□□ -0.08
VPS13AQ96RL7 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
VPS13AQ96RL7 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
VPS13AQ96RL7 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS13AQ96RL7 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS13AQ96RL7 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC14.55□□□□□ -0.08
VPS13AQ96RL7 NDUFA3-214ENST00000485876 963 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS13AQ96RL7 AC130456.3-201ENST00000561762 633 ntTSL 3 BASIC14.55□□□□□ -0.08
VPS13AQ96RL7 AC005154.1-232ENST00000582549 556 ntTSL 5 BASIC14.55□□□□□ -0.08
VPS13AQ96RL7 MIR6720-201ENST00000611664 98 ntBASIC14.55□□□□□ -0.08
VPS13AQ96RL7 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC14.55□□□□□ -0.08
VPS13AQ96RL7 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
VPS13AQ96RL7 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS13AQ96RL7 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS13AQ96RL7 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
VPS13AQ96RL7 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS13AQ96RL7 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC14.55□□□□□ -0.08
VPS13AQ96RL7 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
VPS13AQ96RL7 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS13AQ96RL7 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS13AQ96RL7 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS13AQ96RL7 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS13AQ96RL7 COLEC11-204ENST00000402794 1134 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
VPS13AQ96RL7 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC14.55□□□□□ -0.08
VPS13AQ96RL7 OR2R1P-201ENST00000441404 914 ntBASIC14.55□□□□□ -0.08
VPS13AQ96RL7 LRRC75A-AS1-213ENST00000484836 821 ntTSL 2 BASIC14.55□□□□□ -0.08
VPS13AQ96RL7 AC034231.1-201ENST00000507251 537 ntTSL 4 BASIC14.55□□□□□ -0.08
VPS13AQ96RL7 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC14.54□□□□□ -0.08
VPS13AQ96RL7 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS13AQ96RL7 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC14.54□□□□□ -0.08
VPS13AQ96RL7 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC14.54□□□□□ -0.08
VPS13AQ96RL7 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC14.54□□□□□ -0.08
VPS13AQ96RL7 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS13AQ96RL7 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS13AQ96RL7 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS13AQ96RL7 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS13AQ96RL7 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC14.54□□□□□ -0.08
VPS13AQ96RL7 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS13AQ96RL7 CYB561D1-203ENST00000393709 620 ntAPPRIS ALT1 TSL 4 BASIC14.54□□□□□ -0.08
VPS13AQ96RL7 Z82249.1-201ENST00000453866 568 ntTSL 4 BASIC14.54□□□□□ -0.08
VPS13AQ96RL7 TIMMDC1-207ENST00000493694 710 ntTSL 2 BASIC14.54□□□□□ -0.08
VPS13AQ96RL7 GLUD1P3-201ENST00000507952 896 ntTSL 2 BASIC14.54□□□□□ -0.08
VPS13AQ96RL7 PHB-210ENST00000511832 1509 ntTSL 2 BASIC14.54□□□□□ -0.08
VPS13AQ96RL7 FAM86B3P-203ENST00000523992 854 ntBASIC14.54□□□□□ -0.08
VPS13AQ96RL7 ASB15-207ENST00000540573 1651 ntTSL 2 BASIC14.54□□□□□ -0.08
VPS13AQ96RL7 SELENOW-212ENST00000601048 888 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS13AQ96RL7 PPHLN1-223ENST00000610488 1521 ntTSL 5 BASIC14.54□□□□□ -0.08
VPS13AQ96RL7 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC14.54□□□□□ -0.08
VPS13AQ96RL7 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS13AQ96RL7 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
VPS13AQ96RL7 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC14.54□□□□□ -0.08
VPS13AQ96RL7 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC14.54□□□□□ -0.08
VPS13AQ96RL7 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS13AQ96RL7 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
VPS13AQ96RL7 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS13AQ96RL7 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC14.54□□□□□ -0.08
VPS13AQ96RL7 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS13AQ96RL7 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS13AQ96RL7 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS13AQ96RL7 AL356417.1-201ENST00000421161 845 ntTSL 3 BASIC14.54□□□□□ -0.08
VPS13AQ96RL7 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 60.8 ms