Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC15.14■□□□□ 0.01
HMGB4Q8WW32 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HMGB4Q8WW32 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
HMGB4Q8WW32 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HMGB4Q8WW32 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
HMGB4Q8WW32 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC15.14■□□□□ 0.01
HMGB4Q8WW32 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
HMGB4Q8WW32 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC15.14■□□□□ 0.01
HMGB4Q8WW32 AC104457.1-201ENST00000401024 814 ntBASIC15.14■□□□□ 0.01
HMGB4Q8WW32 ACTG1P2-201ENST00000415776 1125 ntBASIC15.14■□□□□ 0.01
HMGB4Q8WW32 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC15.14■□□□□ 0.01
HMGB4Q8WW32 ACTG1P11-201ENST00000425411 1125 ntBASIC15.14■□□□□ 0.01
HMGB4Q8WW32 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC15.14■□□□□ 0.01
HMGB4Q8WW32 MSRA-203ENST00000441698 788 ntTSL 2 BASIC15.14■□□□□ 0.01
HMGB4Q8WW32 AC104073.2-201ENST00000453737 312 ntBASIC15.14■□□□□ 0.01
HMGB4Q8WW32 TUBB8P8-201ENST00000458717 1058 ntBASIC15.14■□□□□ 0.01
HMGB4Q8WW32 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
HMGB4Q8WW32 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
HMGB4Q8WW32 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC15.14■□□□□ 0.01
HMGB4Q8WW32 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HMGB4Q8WW32 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC15.14■□□□□ 0.01
HMGB4Q8WW32 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC15.14■□□□□ 0.01
HMGB4Q8WW32 AC100827.2-201ENST00000563214 1194 ntBASIC15.14■□□□□ 0.01
HMGB4Q8WW32 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC15.14■□□□□ 0.01
HMGB4Q8WW32 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HMGB4Q8WW32 RN7SL163P-201ENST00000583100 276 ntBASIC15.14■□□□□ 0.01
HMGB4Q8WW32 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC15.14■□□□□ 0.01
HMGB4Q8WW32 BNIP3P13-201ENST00000599968 566 ntBASIC15.14■□□□□ 0.01
HMGB4Q8WW32 AL358472.3-201ENST00000608147 415 ntBASIC15.14■□□□□ 0.01
HMGB4Q8WW32 AC002472.3-201ENST00000640124 621 ntBASIC15.14■□□□□ 0.01
HMGB4Q8WW32 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
HMGB4Q8WW32 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
HMGB4Q8WW32 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC15.14■□□□□ 0.01
HMGB4Q8WW32 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HMGB4Q8WW32 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HMGB4Q8WW32 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
HMGB4Q8WW32 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HMGB4Q8WW32 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HMGB4Q8WW32 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC15.13■□□□□ 0.01
HMGB4Q8WW32 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
HMGB4Q8WW32 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HMGB4Q8WW32 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HMGB4Q8WW32 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
HMGB4Q8WW32 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HMGB4Q8WW32 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
HMGB4Q8WW32 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC15.13■□□□□ 0.01
HMGB4Q8WW32 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HMGB4Q8WW32 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
HMGB4Q8WW32 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
HMGB4Q8WW32 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
HMGB4Q8WW32 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC15.13■□□□□ 0.01
HMGB4Q8WW32 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HMGB4Q8WW32 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HMGB4Q8WW32 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
HMGB4Q8WW32 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
HMGB4Q8WW32 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HMGB4Q8WW32 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
HMGB4Q8WW32 FXNP2-201ENST00000411625 547 ntBASIC15.13■□□□□ 0.01
HMGB4Q8WW32 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC15.13■□□□□ 0.01
HMGB4Q8WW32 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC15.13■□□□□ 0.01
HMGB4Q8WW32 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
HMGB4Q8WW32 PARP8-206ENST00000503665 572 ntTSL 4 BASIC15.13■□□□□ 0.01
HMGB4Q8WW32 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC15.13■□□□□ 0.01
HMGB4Q8WW32 AC134698.3-201ENST00000523880 214 ntBASIC15.13■□□□□ 0.01
HMGB4Q8WW32 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC15.13■□□□□ 0.01
HMGB4Q8WW32 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
HMGB4Q8WW32 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HMGB4Q8WW32 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
HMGB4Q8WW32 AL359258.3-201ENST00000622910 2331 ntBASIC15.13■□□□□ 0.01
HMGB4Q8WW32 AL137783.1-201ENST00000623494 1896 ntBASIC15.13■□□□□ 0.01
HMGB4Q8WW32 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC15.13■□□□□ 0.01
HMGB4Q8WW32 AC100757.4-201ENST00000626934 759 ntBASIC15.13■□□□□ 0.01
HMGB4Q8WW32 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC15.13■□□□□ 0.01
HMGB4Q8WW32 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC15.13■□□□□ 0.01
HMGB4Q8WW32 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HMGB4Q8WW32 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC15.13■□□□□ 0.01
HMGB4Q8WW32 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC15.13■□□□□ 0.01
HMGB4Q8WW32 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
HMGB4Q8WW32 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC15.13■□□□□ 0.01
HMGB4Q8WW32 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC15.13■□□□□ 0.01
HMGB4Q8WW32 PKD1P5-201ENST00000532415 10291 ntBASIC15.13■□□□□ 0.01
HMGB4Q8WW32 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC15.13■□□□□ 0.01
HMGB4Q8WW32 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HMGB4Q8WW32 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
HMGB4Q8WW32 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
HMGB4Q8WW32 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC15.13■□□□□ 0.01
HMGB4Q8WW32 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC15.13■□□□□ 0.01
HMGB4Q8WW32 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
HMGB4Q8WW32 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
HMGB4Q8WW32 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HMGB4Q8WW32 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
HMGB4Q8WW32 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC15.12■□□□□ 0.01
HMGB4Q8WW32 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HMGB4Q8WW32 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HMGB4Q8WW32 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC15.12■□□□□ 0.01
HMGB4Q8WW32 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HMGB4Q8WW32 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC15.12■□□□□ 0.01
HMGB4Q8WW32 ANKRD26P3-201ENST00000454044 2748 ntBASIC15.12■□□□□ 0.01
HMGB4Q8WW32 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
HMGB4Q8WW32 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC15.12■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 61.3 ms