Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 USP31-203ENST00000567975 2142 ntTSL 2 BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 HIC2-203ENST00000443632 6940 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 AC152010.1-201ENST00000415779 2006 ntBASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 KLF2P3-201ENST00000451977 1087 ntBASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 STC1-202ENST00000524323 1748 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 GATD1-206ENST00000526325 756 ntTSL 5 BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 AC069262.1-201ENST00000539058 672 ntBASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 FHL2-212ENST00000607522 759 ntTSL 2 BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 AC018529.1-201ENST00000613063 361 ntBASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 DKFZP434A062-201ENST00000573103 5021 ntBASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 TCF12-201ENST00000267811 6061 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 BAD-202ENST00000394531 631 ntTSL 3 BASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 MIR943-201ENST00000401286 94 ntBASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 AC107890.1-201ENST00000422478 521 ntBASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 AC093214.1-201ENST00000511688 1107 ntBASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 BAD-207ENST00000544785 525 ntTSL 3 BASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 AC024267.1-201ENST00000582320 895 ntBASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 SSH2-211ENST00000590153 570 ntTSL 4 BASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 YIPF6-204ENST00000462683 6741 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 AP001267.2-201ENST00000532619 2086 ntBASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 FLNA-201ENST00000344736 7932 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
PPP4R4Q6NUP7 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms