Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS53Q5VIR6 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS53Q5VIR6 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS53Q5VIR6 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS53Q5VIR6 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS53Q5VIR6 AC007292.2-201ENST00000593524 1812 ntBASIC18.3■□□□□ 0.52
VPS53Q5VIR6 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS53Q5VIR6 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS53Q5VIR6 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS53Q5VIR6 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VPS53Q5VIR6 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS53Q5VIR6 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS53Q5VIR6 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS53Q5VIR6 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS53Q5VIR6 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS53Q5VIR6 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS53Q5VIR6 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC18.3■□□□□ 0.52
VPS53Q5VIR6 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VPS53Q5VIR6 AC005034.1-201ENST00000426657 489 ntBASIC18.3■□□□□ 0.52
VPS53Q5VIR6 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC18.3■□□□□ 0.52
VPS53Q5VIR6 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC18.3■□□□□ 0.52
VPS53Q5VIR6 TTTY23B-201ENST00000442790 549 ntBASIC18.3■□□□□ 0.52
VPS53Q5VIR6 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC18.3■□□□□ 0.52
VPS53Q5VIR6 AC011495.1-201ENST00000498085 584 ntBASIC18.3■□□□□ 0.52
VPS53Q5VIR6 USP32P1-208ENST00000506594 1164 ntBASIC18.3■□□□□ 0.52
VPS53Q5VIR6 TDH-203ENST00000531764 1110 ntBASIC18.3■□□□□ 0.52
VPS53Q5VIR6 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC18.3■□□□□ 0.52
VPS53Q5VIR6 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC18.3■□□□□ 0.52
VPS53Q5VIR6 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC18.3■□□□□ 0.52
VPS53Q5VIR6 AL035252.4-201ENST00000624174 288 ntBASIC18.3■□□□□ 0.52
VPS53Q5VIR6 SERF2-217ENST00000630046 862 ntTSL 5 BASIC18.3■□□□□ 0.52
VPS53Q5VIR6 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC18.3■□□□□ 0.52
VPS53Q5VIR6 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC18.3■□□□□ 0.52
VPS53Q5VIR6 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC18.3■□□□□ 0.52
VPS53Q5VIR6 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS53Q5VIR6 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS53Q5VIR6 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
VPS53Q5VIR6 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS53Q5VIR6 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC18.3■□□□□ 0.52
VPS53Q5VIR6 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS53Q5VIR6 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS53Q5VIR6 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS53Q5VIR6 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC18.3■□□□□ 0.52
VPS53Q5VIR6 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC18.3■□□□□ 0.52
VPS53Q5VIR6 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS53Q5VIR6 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VPS53Q5VIR6 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC18.3■□□□□ 0.52
VPS53Q5VIR6 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
VPS53Q5VIR6 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
VPS53Q5VIR6 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC18.3■□□□□ 0.52
VPS53Q5VIR6 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
VPS53Q5VIR6 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
VPS53Q5VIR6 PES1-204ENST00000402284 2144 ntTSL 5 BASIC18.29■□□□□ 0.52
VPS53Q5VIR6 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
VPS53Q5VIR6 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC18.29■□□□□ 0.52
VPS53Q5VIR6 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC18.29■□□□□ 0.52
VPS53Q5VIR6 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VPS53Q5VIR6 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
VPS53Q5VIR6 AC012508.2-201ENST00000567613 1472 ntBASIC18.29■□□□□ 0.52
VPS53Q5VIR6 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC18.29■□□□□ 0.52
VPS53Q5VIR6 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
VPS53Q5VIR6 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
VPS53Q5VIR6 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC18.29■□□□□ 0.52
VPS53Q5VIR6 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
VPS53Q5VIR6 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VPS53Q5VIR6 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VPS53Q5VIR6 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC18.29■□□□□ 0.52
VPS53Q5VIR6 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC18.29■□□□□ 0.52
VPS53Q5VIR6 KLF2P2-201ENST00000416807 1039 ntBASIC18.29■□□□□ 0.52
VPS53Q5VIR6 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VPS53Q5VIR6 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC18.29■□□□□ 0.52
VPS53Q5VIR6 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
VPS53Q5VIR6 GIMAP3P-201ENST00000495150 836 ntBASIC18.29■□□□□ 0.52
VPS53Q5VIR6 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
VPS53Q5VIR6 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
VPS53Q5VIR6 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
VPS53Q5VIR6 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
VPS53Q5VIR6 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC18.29■□□□□ 0.52
VPS53Q5VIR6 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC18.29■□□□□ 0.52
VPS53Q5VIR6 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC18.29■□□□□ 0.52
VPS53Q5VIR6 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
VPS53Q5VIR6 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VPS53Q5VIR6 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VPS53Q5VIR6 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC18.29■□□□□ 0.52
VPS53Q5VIR6 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC18.29■□□□□ 0.52
VPS53Q5VIR6 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
VPS53Q5VIR6 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VPS53Q5VIR6 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
VPS53Q5VIR6 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
VPS53Q5VIR6 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VPS53Q5VIR6 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
VPS53Q5VIR6 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS53Q5VIR6 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC18.28■□□□□ 0.52
VPS53Q5VIR6 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
VPS53Q5VIR6 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS53Q5VIR6 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC18.28■□□□□ 0.52
VPS53Q5VIR6 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC18.28■□□□□ 0.52
VPS53Q5VIR6 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS53Q5VIR6 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS53Q5VIR6 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 62.2 ms